Mytilus californianus (California mussel): 127699110
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Entry
127699110 CDS
T08804
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD-like isoform X1
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
mcaf
Mytilus californianus (California mussel)
Pathway
mcaf03022
Basal transcription factors
mcaf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mcaf00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
127699110
09124 Replication and repair
03420 Nucleotide excision repair
127699110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcaf03021
]
127699110
03036 Chromosome and associated proteins [BR:
mcaf03036
]
127699110
03400 DNA repair and recombination proteins [BR:
mcaf03400
]
127699110
Enzymes [BR:
mcaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
127699110
Transcription machinery [BR:
mcaf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
127699110
Chromosome and associated proteins [BR:
mcaf03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
127699110
DNA repair and recombination proteins [BR:
mcaf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
127699110
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
DEAD
ResIII
nSTAND3
AAA_11
SesA
Exog_C
Motif
Other DBs
NCBI-GeneID:
127699110
NCBI-ProteinID:
XP_052058810
LinkDB
All DBs
Position
Unknown
AA seq
759 aa
AA seq
DB search
MKINVDGLLVLFPYDYIYPEQYMYMVELKRTLDAKGHCALEMPSGTGKTVSLLSLIVAYM
QANPLEVTKLIYCSRTVSELEKVVEELKNLVKFYEESEEKLKIVGLALSSRKNLCIHPEV
SQEREGKSMDGLCHKMTSSFIRVKRKSDPTVPVCDFYEKFDKIGRQTPLPTGIYGLDELK
DYGKDRGFCPYFLARYAINHANIVVYSYYYLLDPKISELVSSELSKKAVVVFDEAHNIDN
VCIESMSVKISKRTLEKCQQNLEKLSEHIRRIKESNAERLNDEYLKLVQGLRDKNLARET
DQVLANPVLPDEVLQENVPGNIRTAEHFAAFMKRFLEYLKIRFRVQHVVSESPPSFLKDC
VQKVCIERKPLRFCAERLSSLMRTLELTDIHDFSALTLISNFATLVSTYTKGFVIIIEPF
DDRTPTISNPVLHFSCMDASIAIKPVFNRFQSVVITSGTLSPLDMYPKILDFRPVTMATF
TMTLARTCICPMIISKGNDQVAMTSRFESREDVAVVRNYGNLLVEMATIVPDGVVCFFTS
YVYMETTIASWYEQGIIDQILKHKLLFIETQDGAETTLALYNYQKACENGRGAVLLSVAR
GKVSEGIDFDHHFGRAVLMLGIPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHAA
QCVGRCLRGKTDYGIMAFADKRFARADKRGKLPRWIQEHLKDELCNLSVDEAIQVSKRFL
RRMAQPFTREDQLGLSLLTVEQLQSEETKKKLEQKMQYV
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgaagataaatgtagacggcttgcttgtactcttcccttatgactacatctatccagag
cagtatatgtacatggtagagctgaaaagaacactagatgcaaagggacactgtgcattg
gagatgccctcaggtacagggaagacagtatcccttctatctctaattgttgcttatatg
caggccaaccctttagaagtaacaaagttgatatattgttctagaacagtatctgagtta
gagaaggttgttgaagaattaaagaatttggtcaagttttatgaagaatcagaagagaaa
ctgaaaattgtaggattagctcttagctccaggaagaatctgtgtatacatcctgaggtg
agccaggagagagaaggaaaaagtatggatggactttgtcataaaatgacgtcatctttc
atcagggtcaaacgcaagagtgatcctacagttccagtttgtgatttctatgaaaaattt
gataagataggaagacagactcctctaccaacaggaatatatggtttagatgaattaaaa
gactatggaaaagatcgaggattttgcccctatttcttagccagatatgctataaatcat
gccaatatagttgtgtacagttattattatttattagatcctaaaatctcagaacttgta
tccagtgaactttctaaaaaagctgtagttgtatttgatgaggcccacaacatagacaat
gtatgtatagaatctatgagtgtgaaaatctccaaacggacgctagaaaaatgtcaacag
aatctggaaaaactaagtgaacacattagaaggataaaagaatcaaatgctgaaagatta
aatgatgaatatttaaaactggtacaaggactaagggataaaaatttagcccgagaaaca
gaccaagtacttgctaatccagtcttaccagatgaagtacttcaggagaatgtacctggt
aatataagaactgcagaacattttgcagcatttatgaaaagatttttagaatatttaaaa
attagatttagagtacagcatgttgtgtcagaaagtcctccatccttccttaaagactgt
gttcaaaaagtctgcattgaaagaaaacctttaagattttgtgcagaaagattgagttca
ttaatgaggacactagaattaacagatattcatgacttttcagcacttacactcatatct
aactttgccacactagtcagtacatatacaaaaggttttgtcataattattgaacccttt
gatgacagaactccaactatatctaaccctgtgctacacttcagttgtatggatgcttct
attgctataaaacctgtctttaatagattccagtcagttgtcataacatcagggacactc
tcacctttagacatgtatcctaagatattagattttagaccagtaaccatggcaaccttc
acaatgaccttggcaaggacatgtatatgcccaatgattattagtaaaggtaatgatcag
gttgccatgacatccagatttgaatccagggaagatgtagctgtagtacgtaactatggt
aacctgttagtagagatggctaccattgttccagatggggttgtttgcttctttactagt
tatgtttatatggaaacaacaatagccagttggtatgaacagggtattatagaccaaata
ttgaagcacaaattattgttcatagagacacaagatggtgcagaaacaacgcttgctttg
tataattatcagaaggcatgtgagaatggcagaggggctgtgctgttgtcagttgcaaga
gggaaagtgtcagagggaatagattttgatcaccactttgggagagcagtactgatgttg
ggtataccatatgtttatacacagagcaggatattgaaggccagattagagtacctaaga
gaccagttccagatcagagagaatgattttctcacattcgatgccatgagacatgcagct
cagtgtgtagggagatgtctcaggggtaaaacagactatggtatcatggcattcgctgat
aagagatttgccagggcagataaacgtggaaaacttccaagatggatacaggaacatctg
aaagacgaactatgcaatctatctgtggatgaagctatacaagtgtccaagaggtttctg
aggaggatggcacaaccatttacaagagaagatcagttaggactttcattactaacagta
gaacaactacagtcagaggaaacaaagaaaaaattagaacaaaaaatgcaatatgtttga
DBGET
integrated database retrieval system
