Mytilus californianus (California mussel): 127700001
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Entry
127700001 CDS
T08804
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
mcaf
Mytilus californianus (California mussel)
Pathway
mcaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127700001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcaf03019
]
127700001
Messenger RNA biogenesis [BR:
mcaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127700001
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
127700001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
GapR_DNA-bd
EIAV_Rev
Motif
Other DBs
NCBI-GeneID:
127700001
NCBI-ProteinID:
XP_052059389
LinkDB
All DBs
Position
Unknown
AA seq
712 aa
AA seq
DB search
MADRRKLQGEIDRCLKKVTEGVESFEDIWQKVHSAANANQKEKYEADLKREIKKLQRLRD
HIKTWCSSSDIKDKRILVENRKLIETQMERFKIVERETKTKAYSKEGLGAAAKMDPHSKE
KGDVTNWLSQTIENLNLQLEQFESRIEQLTTKKKKMDKDKQDIFEELKAQQDKHLFHIKQ
LETIMRMVDNDALPIEQIKKIKDDVEYYVDCNQDPDFEENDFIYDELDLEDLGAAVLASS
PPNDDHYSDNISGTPTSTNSSSPSPSPSLSINHSKDNEENDRKIKKSINDEKNKSIPLIS
SPTSTNSTSSNTSSNHGNNNKVVTTPSKLFTGISLNDSTNSNHRQVTPPPLITNSTTIQP
SMTEIKNLQNSLEHSGMLSTNSSLLTNSVSLNSTIPRASSPSLLINNISSVSPSVSFIGS
SSASTFVTSNTNGSSVKPEVKMVMNGPLNAGGPLLKPQSLTWYKAARESLSCSESSSESM
SSLKSIAQQAVVNAGLENQIPPPSSTETVSISTESRVLFNNSVITSIAPQVPPPTSPSPT
DQPTQTTTIRLNPLLGVAPLGPVPLSREHFYQLTMLEAAYHHLPHPSDSERIRHYLPRHP
FPTPTYYPQLPPPHADSVDYFFQRLSTETLFFIFYYMEGTKAQYLAAKALKKQSWRFHTK
YMMWFQRHEEPKTITEDFEQGTYIYFDYEKWAQRKKEGFTFEYRYLEDRDLN
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atggctgataggcgaaagctacaaggagaaatagatagatgtcttaaaaaagtaacagaa
ggtgtggagtcatttgaagatatttggcaaaaggttcatagtgctgccaatgcaaatcaa
aaagaaaagtatgaagctgatcttaaaagagaaattaaaaaacttcagcgtctgcgggac
catatcaagacgtggtgttcaagtagtgacattaaagataaaagaattttggtggaaaac
agaaagttgatagaaactcaaatggagagatttaaaatcgtagaacgagaaaccaaaaca
aaagcttactccaaagaaggacttggagcagctgccaaaatggaccctcattctaaggaa
aagggagatgtaacaaattggttatcccaaacaatagagaatctgaatttacagttagaa
cagttcgaaagcaggatagaacagttgaccaccaagaaaaagaagatggacaaagataaa
caagacatatttgaagaattaaaagctcaacaagataaacatttgtttcatataaaacag
ttggaaaccatcatgagaatggtggacaatgatgctttacctattgaacagatcaagaaa
atcaaagatgatgttgagtattatgttgattgtaatcaggatcctgattttgaagaaaat
gatttcatatatgatgagttagatcttgaagacttgggtgcagctgttttagcatcctcg
ccaccaaatgatgaccattattcggacaacatttcaggcactccaacatcaacaaactca
agttctccttcacctagtcctagtctatctataaatcattccaaggacaatgaagaaaat
gacaggaaaattaaaaagtcaatcaatgatgagaaaaataaatcaattccattgatatca
tcgccaacgtcaacaaactccacatcatctaatacatccagtaaccatggtaacaataac
aaagtagtgaccacgccttcaaaattgtttacagggatttctctaaatgacagtacaaac
agcaatcatcgccaagttactccaccacctttaataacaaactcaacgacgatacagcca
agtatgacagaaataaagaacttacaaaactcgttagagcattcaggaatgttgtcgaca
aactcatccttattaacgaactctgtctcattgaactctacaataccaagagcatcgtcg
ccgtctttgcttatcaataatatttcttctgtttcaccaagtgtttcatttattggatca
agtagtgctagtacttttgtaacctccaatactaatggtagtagtgttaaaccggaggtc
aaaatggtcatgaatggacctttaaatgctggtggaccattattgaaacctcagagtcta
acgtggtataaagcagcaagagagtcattgagttgttcagagtccagttcagaatccatg
tcatctttaaagtccatagcacagcaagcagtagtcaatgcgggtttagaaaatcagatt
cctcctccatcgtcaacggaaacggtgtctatatcaacagaatcaagggtgctgtttaac
aattcagtgataacatcaatagcacctcaagttcctccaccgacttcaccgtcaccgact
gaccagccgacacagacaaccacaatacgattgaatcctctcctaggtgttgccccttta
gggcctgtaccattaagtcgagaacatttttatcagttaacaatgttagaggctgcatat
catcacctgccccatccgtctgactctgaaagaattagacattatcttcctcgtcatccg
ttccctacgccgacatattacccacaacttccacctcctcatgcagactcagtggactac
ttctttcaacgattatcgacagaaacattattttttattttctattatatggagggtaca
aaagctcaatatctggcagcaaaagctttgaaaaaacagtcatggagatttcataccaaa
tatatgatgtggtttcaacggcacgaagaaccaaagactatcactgaagattttgaacag
ggcacatatatctactttgactatgaaaaatgggcccagcggaaaaaagaaggtttcacc
tttgagtaccgatatctggaagatcgagatttaaattaa
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