KEGG   Mytilus californianus (California mussel): 127704870
Entry
127704870         CDS       T08804                                 
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
mcaf  Mytilus californianus (California mussel)
Pathway
mcaf03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:mcaf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    127704870
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mcaf03021]
    127704870
   03036 Chromosome and associated proteins [BR:mcaf03036]
    127704870
Transcription machinery [BR:mcaf03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     127704870
   Coactivators
    SAGA/TFTC/STAGA complex
     127704870
Chromosome and associated proteins [BR:mcaf03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     127704870
    STAGA complex
     127704870
    TFTC complex
     127704870
    SAGA complex
     127704870
    SLIK complex
     127704870
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_EML_2 EIF3I WDR55 WD40_MABP1-WDR62_2nd Beta-prop_EML TFIID_NTD2 Beta-prop_WDR90_POC16_2nd Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_IFT122_1st Beta-prop_TEP1_C Beta-prop_IFT140_1st NBCH_WD40 WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_RIG_2nd Beta-prop_Vps41 Beta-prop_DCAF4 Beta-prop_IP5PC_F Beta-prop_HPS5 PEP5_VPS11_N Beta-prop_Nup120_160 Beta-prop_WDR35_TULP_N Beta-prop_WDR19_1st PROPPIN Beta-prop_NOL10_N Mala_s_1-like WD_LRWD1
Other DBs
NCBI-GeneID: 127704870
NCBI-ProteinID: XP_052065060
LinkDB
Position
Unknown
AA seq 579 aa
MKRVRHEQIGGIVQHYLKRRQYLAPEQQTRKETKLTQNVDDMAFKNLLKSESSSENMLSL
SSPSGEANHSEHQFNRFRKYINDSPEPYRQDLQQILLPVFVQLYLELLFNNHKVQANKFY
SRHTKLFDHNVKNKATVEQIYKLSTRADMLSCKEVTDWRDNKYQIKMSEEALDYIRRYIK
QEENTMIVQVFNKYVKVEVAELECKNQQLELKESKQITNGEVLDQQSSSESMKLLKQAIK
SVREGQPSVSSICFYTYINAYHGLCSVDISSDQGMISAGFEDSSIKIWRVSPGSLQTKET
DTDPSKLFLAADYWNVESDESSPKYEETVTLKAHNGSVYKTYFFNQLPYLLSGSEDGSVR
LWDLDGFTNKVCYKGHNYPVWDIDISNSSDYFTSCSQDRTAKLWTTDRIYPLRSFVGHTA
DIDCVKFHPNSNYIATGSSDRTVRLWSLQDGKSVRLMQGHRGTILALAFSPNGQYLASAG
DDRRIRVWDLNTGTLFKELRGHTETVHALSFNKDSTLLASGGIDCCIKAWDVRKGVNNNN
TVVDGHTSAELIGSYQTKSATVIWLNYTKHNVLQAAGAI
NT seq 1740 nt   +upstreamnt  +downstreamnt
atgaagcgagttcgtcacgaacaaataggtggaatagttcaacattatttgaaaaggaga
cagtatttggcaccagaacaacaaactagaaaagaaacaaaattgacacaaaatgtggat
gacatggccttcaagaatttactgaaaagtgaatcctcatcagaaaatatgttatctctt
agtagtccttcaggggaagcaaatcattctgaacatcagtttaacagatttagaaagtat
atcaatgattcccctgagccatacagacaagatttacagcaaattttacttcctgttttt
gtgcagctatatttagagcttttgtttaataatcacaaagtacaagcaaacaagttttac
agtaggcataccaagctatttgatcataatgtgaaaaacaaagcaacagtagagcagatc
tataaactaagtacaagggctgatatgttatcatgtaaagaagtgacagactggagggac
aataaataccaaattaagatgagtgaagaagctctagattatattagaagatatattaag
caagaagaaaacacaatgattgtacaagtatttaacaaatatgttaaggtagaggttgct
gaacttgaatgtaaaaatcaacagttggagttaaaagaaagtaaacaaattacaaatggg
gaagtattagatcaacagtcctcatccgaatctatgaaattgttaaaacaggccataaaa
agtgtacgggaaggacaaccatctgtatcatctatatgtttttatacatatataaatgca
tatcatggactctgtagcgtagatatatcatcagaccagggtatgattagtgctggattt
gaggactcttctatcaaaatatggagagtatctccaggctctctacaaaccaaagaaact
gacacagatccatccaaactattcctggcagctgattactggaatgtagaatcggatgaa
agctcaccaaaatatgaagaaactgtaactttaaaggcacacaatggttcggtgtataaa
acctatttcttcaatcagctgccatatttgttatctggatcagaagatgggtcagtcaga
ctatgggatttagatggttttactaacaaagtgtgttacaaaggccataattatccagta
tgggatatagacatcagtaatagtagtgactacttcacaagttgttcccaagatagaaca
gccaagctgtggacaacagacaggatatatcctctaaggtcatttgtaggtcatacagca
gacatagattgtgtcaagttccatccaaatagcaactacatagcaactggttcaagtgat
agaacagtacgtctctggagtttacaagatgggaagagcgttaggctaatgcaggggcat
agagggacaattctggcattggcattctcaccaaatggacagtatttagcatcagccgga
gatgacagaagaatccgtgtatgggacttgaacacagggactttgtttaaagagcttaga
ggtcatacagaaacagtgcatgctttgtcctttaacaaagacagtacactactggcttca
ggtggaatagattgctgtattaaggcatgggatgtcaggaaaggtgtcaacaataacaac
actgttgtggatggacatacaagtgcagaattgataggaagttaccagactaaatctgca
acagtcatatggttaaattataccaagcacaatgttctacaggcagcaggggccatataa

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