Mytilus californianus (California mussel): 127706975
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Entry
127706975 CDS
T08804
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
mcaf
Mytilus californianus (California mussel)
Pathway
mcaf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mcaf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127706975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcaf03021
]
127706975
03019 Messenger RNA biogenesis [BR:
mcaf03019
]
127706975
Transcription machinery [BR:
mcaf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127706975
Messenger RNA biogenesis [BR:
mcaf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
127706975
U7-dependent histone pre-mRNA processing factors
127706975
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
127706975
NCBI-ProteinID:
XP_052067677
LinkDB
All DBs
Position
Unknown
AA seq
692 aa
AA seq
DB search
MASNETTEGQVPIEESDQLIIKPLGSGQEVGRSCHILEFKGKKIMLDCGIHPGLHGVASL
PYLDCVDVEDIDLLLISHFHLDHCGALPYFLEKTAFKGRCFMTHASKAIYRWLLSDYVKV
SNISTEYQLYADSDIEKSMDKIETLNFHQEVEVNGIKFWCYTAGHVLGAAMFMIEIAGVK
VLYTGDFSRQEDRHLMQAEIPNVHPDILIVEATYGTHIHEKREDREARFTGLVHDIVSRG
GRCLIPVFALGRAQELLLILDEYWSNHPELHDIPIYYASSLAKKCMTVYQTYINAMNDKI
KRQISISNPFVFKHISNLKSMEHFEDIGPSVVLASPGMMQSGLSRELFENWCTDKRNGCI
IAGYCVEGTLAKHILSEPEDIVTMAGARLPLKCSVDYISFSAHTDYQQTSEFIRILKPTH
IVLVHGEQNEMSRLKAALVREYEDDTEYQPFVHNPRNTVSVELNFRGEKMAKVVGKLAAD
RTNVQNKKISGILLKRNFNYHILDPSDLSNYTDLAMSTVTQRISIGFTGTLPLLRYYLKQ
LSGDVEQFEVSGKPALKVFKCITVVIEARMAVIEWMANPVADMYADAVMTVVLRAESDPM
PQRNVPPALLVDKSHVQECLLEMLNDMFGSNSISKLIRNDRMTVTVDDKTAVINVDTLDV
ACEDETLQQVLQTAVSKLFLALSPLKANTQYL
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atggcttctaatgaaacaacagaaggccaagttcctatagaagaaagtgatcagttgatt
ataaaacctttaggttctggtcaagaagtaggtcgatcatgtcacatactggaattcaaa
ggaaagaaaattatgttggactgtggtattcacccaggactacatggagttgcctccctt
ccatacctagattgtgtagatgttgaagacatagacttattgctgatcagtcactttcat
ttagatcattgtggagcattgccatatttcctagagaaaacagcattcaaaggaagatgt
ttcatgacccatgcttcaaaagctatttatagatggctgttgtcagattacgtcaaagtc
agtaatatatccacagaatatcagctatatgcagatagtgatatagagaaaagtatggac
aaaattgagactttgaattttcatcaggaagtagaggttaatggaattaaattttggtgc
tacacagcaggacatgttcttggagctgccatgtttatgatagaaatagctggtgtcaag
gttttatacacaggtgatttctccagacaagaagacagacatttaatgcaagcagaaata
ccaaatgttcacccagatatattgattgttgaagctacatatggcacacacattcatgag
aagagggaagacagggaagcaagatttactggactggtccatgatatagtcagtaggggt
ggaaggtgtctcattccagtatttgcacttggaagagctcaggaacttttactgattcta
gatgaatactggagtaatcaccctgaattacatgatattcctatatactatgcttcatcc
ctggctaagaaatgtatgacagtctatcagacttatatcaatgccatgaacgataaaatc
aaacgacagatcagcatcagcaacccatttgtcttcaaacatatatctaatttaaagagc
atggaacattttgaagatattggaccttcagttgtactggctagcccaggtatgatgcag
agtggactttccagggaactgtttgagaattggtgtacagataaaagaaatggctgtata
attgctggttattgcgtagagggtacattagcaaagcacatcttatcagaaccagaggat
attgtaactatggctggtgccaggctacccttgaaatgttctgtagattatatctcattc
tcagctcatacagattatcaacagactagtgaattcatcagaatactcaaaccaacacat
atagttcttgtccatggagaacagaatgaaatgtccagattaaaggcagctttagttaga
gagtatgaagatgacactgaatatcaaccatttgtacataatcctcgtaatacagtgtct
gtagaattaaactttagaggagaaaaaatggcgaaggttgtaggtaaattggcagcagac
cgtacaaatgtacagaataagaaaatatctggtatcttattaaagaggaacttcaactat
catatattggatccatcagatttgtctaattatactgatctagccatgagtactgtgaca
caaagaatcagtataggttttactggtaccctacctctattacgttattacctgaagcag
ttatctggtgatgtagagcagtttgaagtctctggtaaaccagctctaaaagtcttcaaa
tgtataacagttgttattgaagcaagaatggctgtgatagaatggatggctaatccagta
gcagatatgtatgcagatgctgtaatgacagttgtactcagagcagaatcagatcctatg
ccacaaagaaatgtaccaccagctttgttggtagataaaagtcatgtacaggaatgttta
ctagaaatgttaaatgatatgtttggttctaattccatcagtaagctcatcaggaacgat
agaatgacagttacagtagatgataagacagctgtaattaatgtagacacattggatgtg
gcctgtgaggatgagacattacaacaagttttacaaacagctgtatccaaactattttta
gctctgtcgccactcaaagccaatacacagtatctgtga
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