Mytilus californianus (California mussel): 127720177
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Entry
127720177 CDS
T08804
Name
(RefSeq) exosome component 10-like
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
mcaf
Mytilus californianus (California mussel)
Pathway
mcaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127720177
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcaf03019
]
127720177
Messenger RNA biogenesis [BR:
mcaf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
127720177
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
127720177
NCBI-ProteinID:
XP_052082605
LinkDB
All DBs
Position
Unknown
AA seq
832 aa
AA seq
DB search
MSEEKQTETHEEFLPGFDTLTDYTQQALKTALLATKCSNDLPATGDDFDYYSSYQGVREV
LDIEGNRILNIIQSILKYQSVKGNLTGSSSAVDLEDKFDVLIDANDQILERVGGWLDEAS
GIKKKETTLVVASATPKHNATASWNKKSSPGQGSNLSSYRLLTARNIQRPQMRFKDKIDN
VNRPFVPCIRYKPNAMKTLEESLQLPEDITPEMTENPAFQYPHPYQHELAHLKPLQKSLN
VSSPTDPKPLGETECTIVTKLEELKHLCNTLKTQEEIAIDLEHHSYRSFQGLTCLMQIST
RTNDYIIDTLELRNELHLLNVVFTDPCILKVLHGADMDIGWLQRDLGLYIINMFDTGQAA
RVLNMARHSLAHLLQVYCQVEADKQYQLADWRIRPLPEELIKYAREDTHYLLYIYDRMRN
ELIERGNEQNNLLHSVIQKSTRVCAQVYRKPIYTDGLYMELYKKSKKVFNSRQLAALKNL
YSWRDRIARVEDESIGYVLPNHMLLQISEILPRERQGVLACCNPIPPLVRQYLIEIHNIV
MEAREVPLTTVTTHKIKEPSMYKHPKYNPDSLLNCTHDMSYQQKYQDLGNTPCLLDPSIM
KENPTMFGNSKENITILKKKPILTVFENYSPKEMTRAQRMAAAITATFVSPLSQYLPESR
DDKHQQVFNNWMLMKHTAVKRKETAPTPATSSGPPPAKRQKVEVKDTGDLLQPFGKLKSG
HGRILGKDTDTETSRKRKKKRKMEEEGALELEEEEEPAEEFTPYDYSKVNLNIFEGGTSK
GEKKKVFDPNAGMRKRGRGSKVYKPQFSTAKSSKSSTFGKMDKSQKTQIWPK
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaagaaaaacaaactgaaacgcatgaagagtttctgcctggtttcgacaccctc
actgactatacacagcaagcactgaagacagctttactagccaccaagtgttccaatgat
ttaccagcaacaggagatgactttgattattactctagttatcaaggtgtcagagaagtg
ttggatattgaaggcaacagaattcttaacataatccagagtatactgaaatatcagagt
gtgaagggaaatctgacaggcagtagcagtgctgttgaccttgaagataagtttgatgta
ctgattgatgctaatgaccaaatactggaaagagtgggaggctggctagatgaagcatca
ggaatcaaaaagaaagaaacaacattagttgtagcatcagctaccccaaaacataatgcc
accgctagctggaataaaaagtcttcacctggtcaaggaagtaatttgtccagttacaga
ttgttgacagcccgtaatatacagcgacctcagatgagatttaaagacaaaattgacaat
gtgaatagaccttttgtaccctgtattcgatataaaccaaatgctatgaagacattagaa
gaaagcttgcaattacctgaagatatcacaccagaaatgacagaaaatccagcatttcag
tatccccatccatatcaacatgaacttgcccatctgaagcctttacagaaatctctcaat
gtgtcatcgcctacggaccctaagcctttaggtgaaacagaatgtacaatcgttacaaag
cttgaagaacttaaacatttgtgtaacacactgaagacacaagaagaaatagccattgat
ttagagcaccattcgtacagatcattccaaggattgacatgtctgatgcagatctctacc
agaacgaatgactatattatagacacattagaacttaggaatgaacttcatttactgaat
gtggtttttaccgatccctgtatactaaaggtgttacatggtgcagatatggacattggc
tggttgcaaagagatttggggttatacattatcaacatgtttgatacaggacaggctgcc
agagtgttgaatatggcacggcattccctggcacatttgttacaagtatattgccaggta
gaggctgataagcagtatcagttagctgattggagaatcagaccacttcctgaagaatta
atcaagtatgccagagaagacacacactatttactgtatatctatgacaggatgagaaat
gaactgatcgagagaggaaatgaacagaataatcttcttcattctgtaatacagaagagt
actcgagtctgtgcacaggtatacagaaaacctatatacacagatggtttatacatggaa
ttatacaagaagagtaagaaagtgtttaactctagacaattagccgcattgaaaaactta
tattcatggagagacagaatagctagagtggaggatgaaagtataggctatgtattacca
aaccacatgttattacaaataagtgaaattttgcctagagagagacaaggtgtgcttgct
tgctgtaaccctatacctccactggtcagacagtatctgatagaaatacataatattgta
atggaagctagagaagtacctcttactacagtcacaacacataaaatcaaggaacctagc
atgtacaagcatccaaaatataacccagatagtcttttaaactgtacacatgatatgtca
taccaacagaagtatcaagatcttggtaacacaccatgcctactggatccttcaataatg
aaagagaatccaaccatgtttggaaatagtaaagaaaatataactatactgaagaaaaaa
cctattctaacagtgtttgaaaattattcacccaaagaaatgacgagagcccagagaatg
gcagcagcaataacagccacttttgtcagtccactatcacagtatctcccagaaagtaga
gatgacaaacatcagcaggtgttcaataactggatgttaatgaaacacacagcagtgaag
agaaaagaaactgcacctactccagcgacatcttcaggaccacctccagctaagcgacaa
aaggttgaagtaaaagatacaggagatttgttacaaccatttggaaagctcaaaagtggt
catggaagaatacttggtaaagatacagatactgagacaagcagaaagaggaaaaagaag
aggaaaatggaagaagaaggagcattagaattagaggaggaggaggagcctgcagaagaa
tttacaccatatgattacagcaaagttaatttgaatatatttgaaggagggacctctaaa
ggagagaagaagaaggtctttgatccaaatgcaggaatgaggaagagaggaagaggtagc
aaggtttataagccacagttttcaacagctaaatcatcgaagagttcaacgtttggaaaa
atggacaaatctcaaaagacacaaatatggccaaaataa
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