Mytilus californianus (California mussel): 127720480
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Entry
127720480 CDS
T08804
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
mcaf
Mytilus californianus (California mussel)
Pathway
mcaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127720480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcaf03019
]
127720480
03012 Translation factors [BR:
mcaf03012
]
127720480
Enzymes [BR:
mcaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127720480
Messenger RNA biogenesis [BR:
mcaf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
127720480
Translation factors [BR:
mcaf03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
127720480
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
ATPase
nSTAND3
NPHP3_N
AAA_23
ABC_tran
Motif
Other DBs
NCBI-GeneID:
127720480
NCBI-ProteinID:
XP_052083028
LinkDB
All DBs
Position
Unknown
AA seq
1047 aa
AA seq
DB search
MLKIFSNLCLKNNIIHRMNYRGRGGGRRGYIRERYGNHDQDDEEGGNHNWRGHHQRRQGQ
RQYDDEREGHRQYDDGRQGHRQYDDGNHDRRDYRGRGRGRGGRPPGLRGKEIGLFYARKG
KEKKHREEFEQRPEVSMQGKEDHIQKMLADIENLESDDQLSGGASFSCRKRPDRHRDETA
SSSFSDKTDDVTQEDEVTEVPDLDQMFKLTQQEQDLILEEWNEDMDTGEEDEISLDDQKM
IKELNDKSRNSRYLRMMEFRKKLPSYDMREEVVSVVNSSQVTVISGETGCGKTTQVPQFI
LDDCIQKGQGSKCHIICTQPRRISAVSVAQRVADERAEACGKGNSVGYSIRLERETPRSK
GSILFCTTGILIKYLESDPSLIRASHIIIDEIHERDLLSDFLMIILKDLLPKRPDLKIIL
MSATLNAEQFSKYFNNCPKLNIPGFTFPVTEYRLEDVLEMTKYVPPTAKKKKVRYGPKFK
QDRDEADLNQWNLDAWCRNLEGYSRQTIQSLKDMDLELIDLDLIHSLIRHIVYKLEEGAI
LVFVPGWEQISKLHKLLNNDRMFTSGKFKIIPLHSLMPTINQKEVFNRPPPGVRKIVIAT
NIAETSITIDDVVFVIDCGKIKVKDFHPEQNMTTLEAEWVSRANARQRRGRAGRVQAGHC
FHLFTSLKETELRDYIPPEILRTRLEELCLQIKLLKLGKIEPFINKAMEKPSLQAVHKSI
AMLQNLQALDEDENLLPLGYHLARMPVDPQSGKMILFGAMFGCLDPVCIIAASLSFKDAF
YIPLGKEKEADRTRVRLSEGSQSDHIMLINAFQGWERSKARGTDRQYCYDNFLSGNTLKL
LADMKRQFAELLHDLGFVANRDPRDKEVNINSENIGLVKAVICAGLYPNVAKLTNVPRSM
EKSPSLVLHDGQKVAAHPKSVNANEKVFMSKWFVYHTIMKTSKIWVYDMTGISPYALLFF
GGKISTEEQLWNDEMKDVVVVDNWVRFWCPAETAVLVKKLRKQLDKLLEEKITKTGVTNW
DKSSKEGVLMHAITDLITMEEENISNG
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaaatattttcaaatctatgcctaaagaacaacattatacatagaatgaattat
agaggcagaggtgggggaagaagaggatacataagagaaagatatggtaatcacgatcaa
gatgatgaagaaggtggaaatcacaactggagaggtcatcatcaaagaagacaaggtcaa
aggcagtatgatgatgaaagagaagggcacaggcagtatgatgatggaagacaaggccac
aggcagtatgatgatggaaatcatgatagaagagattatagaggtcgaggtagaggtcgt
ggaggcaggccaccaggactgagaggaaaagaaattggattattttatgccagaaaagga
aaagaaaaaaagcatagagaagaatttgaacagagaccagaagtgtcaatgcagggtaaa
gaagatcacatacagaaaatgttagctgatattgagaatttggaaagtgatgatcaactg
tcaggtggagcctccttcagttgcaggaagagacccgacagacacagagatgaaacagcc
tcttcatcattcagtgataagacagatgacgtaactcaggaagatgaagtgacagaggtt
cctgacttagatcagatgtttaagttaacacaacaagaacaggatttgatattagaggaa
tggaatgaggatatggacacaggtgaagaagatgaaatatctttagatgaccagaaaatg
ataaaagaattaaatgacaagagtagaaactctcggtatttaagaatgatggagttcaga
aagaaattaccttcttatgatatgagggaggaggttgtgtctgtggtgaattctagtcaa
gttactgttatcagtggagaaactggatgtggtaaaactacacaggttccacagtttatt
ttagatgattgtattcagaaaggacaggggtcaaaatgtcacattatttgtacacaacca
aggagaattagtgctgtttcagtagcacagagagtggctgatgagagagctgaggcttgt
gggaagggtaattctgttggatattctataagattagaaagagagaccccaagaagtaaa
ggttcaatactgttttgtacaactggtattttgatcaaatacctggaatcagacccatcc
ttgatcagggccagtcacattattattgatgagattcatgagagagatttgttgtcagat
ttcctgatgattattctgaaagatttgttaccaaagcgaccagatttaaaaattatattg
atgagtgctacattaaatgcagagcaattttcaaagtattttaataattgtcccaagttg
aatatcccaggttttaccttcccagtgacagaatacagattggaagatgtcttagagatg
actaagtatgttccgcctacagctaaaaagaaaaaggttcgatatggaccaaaattcaaa
caggacagggatgaagcagacttgaatcagtggaacttggatgcctggtgcagaaatctt
gaagggtactcaaggcaaacaattcagtccctgaaggatatggatttggaactaatagac
ctggacttgatacacagtctgattagacacattgtatataaattggaggagggagccata
ttggtgtttgttcctggatgggaacagatcagtaaattacataagttattgaataatgac
agaatgtttacatcaggtaaatttaagattattccattacactctttgatgcctaccatt
aaccagaaagaagtctttaacagacccccacctggtgtgagaaaaattgtcatagcaaca
aatattgctgagaccagtataacaatagatgatgtcgtgtttgttattgactgtggtaaa
attaaagtgaaggacttccatccagaacagaatatgacaacattagaggctgaatgggtg
tcaagggcaaatgcaagacaaagacgtggaagagctggaagagtacaagctggccattgt
tttcatctgtttacaagtttaaaagagactgaattaagagattacataccacctgaaatt
ttgaggacaagattagaggaactctgcctgcagataaagctattaaaattaggaaaaata
gaaccgttcattaacaaagccatggagaaaccatctttacaagctgttcacaaatctatt
gctatgttacagaatcttcaagctctggatgaagacgagaacttattaccactgggctac
caccttgccagaatgccagtggacccacaatctgggaagatgatcctgtttggtgctatg
tttgggtgtttagaccctgtctgtattattgcagccagtcttagttttaaagatgctttc
tatattcctctgggtaaagagaaagaagctgatagaactagagtaagactctctgaaggc
agtcaaagtgatcacatcatgttaataaatgcttttcagggatgggaaagatccaaagca
agaggaacagacagacaatactgctacgacaactttttatctgggaatacattaaaattg
ctggcagatatgaaaagacagtttgctgaattactacatgatcttggttttgttgccaat
agagatcctagagataaggaagtcaatataaattcagagaatattggattagttaaagct
gtaatatgtgcaggattgtatccaaatgtagctaagttgacaaatgttccacgatcaatg
gaaaaatctcctagtttagtattacatgatggtcagaaggttgctgctcatccaaaatca
gtaaatgccaatgaaaaagtcttcatgtccaaatggtttgtttatcatacaatcatgaag
acttctaagatatgggtatatgacatgacaggtatttcaccatatgctttgttatttttt
ggaggaaaaatcagcactgaagaacaattatggaatgatgaaatgaaggatgtagtggta
gttgacaattgggtaagattctggtgccctgctgaaacagctgtgcttgtgaagaaatta
aggaagcagttggataaacttttggaagaaaaaataaccaaaaccggagtaactaactgg
gacaaaagttcaaaagaaggtgtactaatgcatgcaataacagacttaattactatggaa
gaagagaatatttcaaatggctga
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integrated database retrieval system
