Mytilus californianus (California mussel): 127726952
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Entry
127726952 CDS
T08804
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mcaf
Mytilus californianus (California mussel)
Brite
KEGG Orthology (KO) [BR:
mcaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mcaf03016
]
127726952
Enzymes [BR:
mcaf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
127726952
Transfer RNA biogenesis [BR:
mcaf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
127726952
Prokaryotic type
tRNA splicing ligases
127726952
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
ExbD
Motif
Other DBs
NCBI-GeneID:
127726952
NCBI-ProteinID:
XP_052090287
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MVVRTYNDELSYLEKVGTHSWRIKKGFVPNMKVEGLFYVNTHLEKLMFDELKQSCRSQGY
GGFLPGMKQIGNVAALPGIVGKSIGLPDVHSGYGFAIGNMAAFDCGDRDAVVSPGGVGFD
INCGVRLLRTNLCEKDVIPVKEQLAQCLFDHIPVGVGSKGIIPMTAMNLEEALEMGMDWS
LREGYAWAEDKEHCEEYGRMLQADPSKVSSRAKKRGLPQLGTLGAGNHYAEIQVVEEIFN
PFAAKRMGIDFKGQVCVMIHCGSRGLGHQVATDALVAMEKAMKRDKIDTNDRQLACAKIN
SVEGQDYLKGMASAANYAWVNRSSMTFLARQAFAKMFNTTPDDLDMQVIYDVSHNIAKFE
EHYLDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
VETFGSTCHGAGRALSRAKSRRNLDYTSVLAALEEQGISIRVASPKLVMEEAPASYKNVT
DVVDTCQAAGISQKAIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtagtgagaacttacaatgatgaattgtcctatctggaaaaggttggaacacattca
tggagaattaagaaaggctttgttccaaacatgaaggttgaaggtttattttatgtcaat
acacacttggagaaactgatgtttgatgagttaaaacagtcctgtaggtcacaaggttat
ggaggtttcttacctggaatgaaacagattggaaatgtggctgctttaccaggaattgtg
ggaaaatctattggcttacctgatgtacactcaggatatggatttgctataggtaacatg
gctgcttttgattgtggggatcgtgatgctgttgtgtcaccaggtggtgttggatttgat
atcaattgtggtgtaagattgttgagaacaaacctgtgtgaaaaagatgtaattcctgtg
aaagaacagttagctcaatgtttatttgatcacattcctgttggtgtcggatccaaaggc
atcattccaatgaccgctatgaatctagaggaagccttagaaatggggatggattggtcc
ttgagagaaggctatgcatgggctgaagacaaagagcattgtgaagaatatggaaggatg
ttacaggctgacccttctaaggtcagcagtcgggccaagaaaaggggtctcccacagctt
ggaactttgggtgcaggcaatcattatgcagagattcaagttgtagaagaaatattcaac
ccgtttgctgctaaaagaatgggaatagatttcaaaggacaagtgtgtgttatgatccac
tgtggaagtaggggattaggtcatcaggtggctacagatgcccttgttgccatggaaaag
gctatgaagcgtgacaagattgatacaaatgacagacagctggcttgtgcaaaaatcaac
tctgtagaaggtcaagattacttgaaaggcatggcatcagctgctaattatgcatgggtc
aacaggtcaagtatgacctttttagctagacaggcatttgccaaaatgtttaatactaca
ccagatgatttagatatgcaagttatttatgatgtttcacacaacatagctaaatttgaa
gaacattatcttgatggaaaacaaaaaacattactggttcatcgaaaaggttctacacgt
gccttccctccacatcacccattgataccagtagactatcagctgactggacaacctgtt
ctgattggtggaacaatgggaacctgtagttatgtgttgacaggaactgaacaaggaatg
gtggaaacttttggcagcacatgccatggagcaggaagggctctgtctagagcaaaatct
cgtagaaatcttgactacacatctgtattagctgcccttgaagagcaggggatcagtata
cgagtggcatcacctaagcttgttatggaggaggcaccagcatcttacaaaaacgtaaca
gatgttgttgacacatgtcaggcagcaggcattagtcagaaagctatcaaacttcgaccg
attgctgtaatcaaaggatga
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