KEGG   Mytilus californianus (California mussel): 127727041
Entry
127727041         CDS       T08804                                 
Name
(RefSeq) exosome RNA helicase MTR4-like
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
mcaf  Mytilus californianus (California mussel)
Pathway
mcaf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mcaf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    127727041
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mcaf03019]
    127727041
   03041 Spliceosome [BR:mcaf03041]
    127727041
   03009 Ribosome biogenesis [BR:mcaf03009]
    127727041
   03016 Transfer RNA biogenesis [BR:mcaf03016]
    127727041
Enzymes [BR:mcaf01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     127727041
Messenger RNA biogenesis [BR:mcaf03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     127727041
Spliceosome [BR:mcaf03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    127727041
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    127727041
Ribosome biogenesis [BR:mcaf03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    127727041
Transfer RNA biogenesis [BR:mcaf03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    127727041
SSDB
Motif
Pfam: MTR4_beta-barrel DSHCT DEAD MTR4-like_stalk DEXQc_Suv3 Helicase_C ResIII nSTAND3 AAA_22 Zot
Other DBs
NCBI-GeneID: 127727041
NCBI-ProteinID: XP_052090399
LinkDB
Position
Unknown
AA seq 1028 aa
MAEDFAEDLFNVFDQDTATKVSPLESSINDKSDEQRTDNLLQSIVGTKRPANSVDVEEDN
EEPKMKKIKSLADDAGSTEVMPRIQVHTVETAEACLHEVALPPDAEFVPLTKMPDTLAKE
YPFILDPFQKEALLCLENNQSVLVSAHTSAGKTVVAVYAIAMSLQQKQRVIYTTPIKALS
NQKYRELYEEFQDVGLMTGDVTINPTASCLIMTTEILRSMLYRGSEIMREVAWVIFDEIH
YMRDKERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTDYRPTP
LQHYIFPAGGDGIHLVVDENGEFREENFNTAMSVLRDSGDAAKGDQRGRRGGFKDNESNC
YKIIKMIMERNFAPVIVFSFSKKDCEAYALQMSKLDFNTEEEKGLVDEVFNNAIDALSDE
DKKLPQVEAVLPLLRKGIGIHHGGLLPLLKETIEILFSEGLLKALFATETFAMGLNMPAR
TVLFTSARKFDGKDFRWVTSGEYIQMSGRAGRRGIDDRGIVILMVDEKMSPQAGKQIVKG
LPDYLNSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNYAAIPDLFDKLRRMEVKYGA
IEVPNEDHVSAYYKIRQQLDNLGSDLLTFIQKPQYLLPFLQPGRLVKIKNGNDDFGWTVV
VNIQKKSNQSKSTQDSGPVYVAEVLAHLTKECARSRNSANIKPCPAGERGEMQVIPVLSH
LIQQISAVRLYIPQDLRPIDNRQSVLKSIQEVEKRFPDGVPLIDPIEDMGIKEKGLKECV
KKIEAFEHRMYSHPLHKDPKLEELYQLYERKARVGADIKNLKTELKKKKSLLQMDELKCR
KRVLRRLGYCTASDVIEMKGRVACEISSGDELLMTELLFNGVFNDLSVQQCCALVSCFVF
DEKANEMPKLTETLSGPLRIMQDTARRIARVSREAKIDVDEEQYVESFRPHMMDIVNAWC
NGCTFGQICKMTEVFEGNIIRCMRRLEETLRQMCQASKAIGNTELENKFAEGIRRIKRDI
VFAASLYL
NT seq 3087 nt   +upstreamnt  +downstreamnt
atggcagaagacttcgcagaagacctttttaatgtgtttgaccaggatacagcaactaaa
gtatcccctttagagagttcaattaacgataaatctgatgaacaaaggactgataattta
ctgcagagcattgttggaacaaagagaccagcaaattctgttgatgtagaggaagataat
gaagaaccaaaaatgaaaaagatcaagagtttagctgatgatgcaggctctacagaagta
atgccaagaattcaggtccacacagtagagactgcagaggcttgtcttcatgaggttgca
ttacccccagatgctgagtttgtgcctttaactaagatgccagataccttggccaaagag
taccccttcattttagatccttttcagaaagaggctttattatgcttagaaaacaaccaa
tcagttctagtatcagcccacacatctgctgggaaaacagttgtggcagtgtatgccata
gccatgtcattacaacagaagcagagagtgatatatacaacaccaatcaaagctttaagt
aaccagaaatatcgagagttgtatgaggagttccaggatgttggtctgatgacaggtgat
gttaccattaaccctacagccagttgtcttataatgactacagagattttgagaagtatg
ttatacagaggatcagagattatgagagaagtggcatgggttatctttgatgagatacat
tacatgagagataaagagagaggagttgtatgggaggaaaccattatattattaccagat
aatgtccattatgtatttctgtcggccaccataccaaacgctagacagtttgctgaatgg
atatgtcatttacataaacagccatgtcatgtagtatatacagattacaggcccacacca
ttacagcattacatattccctgctggtggagatggaatacatttagtggtagatgaaaat
ggagagtttagagaagagaattttaacacagcaatgtctgtgctaagagattctggtgat
gctgcaaagggtgaccagaggggaagaagaggaggttttaaagataatgagtcaaattgt
tacaaaataataaagatgataatggaaagaaattttgctccagtgattgtgttcagcttc
agtaagaaagattgtgaagcgtatgcattgcagatgtccaagttagattttaatacagag
gaagagaaaggtcttgtggatgaggtgtttaataatgctatagatgctttatcagacgaa
gataagaaactacctcaggtagaggcagtgttacctctgttgaggaaaggtataggtata
catcatggtggattgttacctctgttgaaagaaaccatagaaatcctcttctctgaagga
ttattaaaggccttatttgctactgaaacctttgccatgggattgaacatgcctgccagg
acagtattgtttacaagtgctaggaagtttgatggtaaagacttcagatgggtaacatct
ggagagtatatacaaatgagtggtcgagcaggaagaagaggtattgatgacagaggtatt
gttatcttaatggttgatgaaaaaatgagccctcaagctggtaaacagattgtcaagggt
ctgccagattacctaaactcagcatttcatctgacctacaacatggtgttgaacttgtta
cgagtggaagaaataaatccagaatatatgttggagagatctttttatcagttccagaat
tatgcagcaatacctgatttgtttgataaacttcgaagaatggaagtgaaatatggcgca
attgaagtacctaatgaagaccatgtgtcagcatattataaaatccgtcaacagttagac
aacttaggcagtgatttactgacatttatacagaaaccacaatatttactccctttctta
cagcctggtaggcttgtgaagattaagaatggaaatgatgattttggttggacagttgta
gtaaatattcagaaaaagtctaaccagagcaagagtacacaagattccggtcctgtatat
gtagctgaagtgttagcacatcttactaaagaatgtgcaagaagtaggaactcagcaaat
atcaaaccatgccctgctggtgaaagaggagaaatgcaggttattccagtattgtcacat
ttaatacaacaaataagtgctgtcagattatacataccacaagatttacgtcccattgat
aacagacaaagtgtgctgaagtcaatacaggaagtggaaaagagatttccagatggagta
ccattgattgatcctatagaagatatgggtataaaagaaaaaggtctgaaagaatgtgtc
aagaaaatagaggcatttgaacacaggatgtactcccatcctttacacaaagaccctaaa
ttagaggaattatatcagctgtatgagagaaaagctagggttggtgctgacataaaaaac
ttaaagacagaattaaaaaagaagaaatcattattacaaatggatgaactgaaatgtaga
aagagagtattaagaagattgggatactgcacagcatcagatgttatagaaatgaaaggg
agagtagcttgtgaaatcagcagtggtgatgagttattaatgacagaattgttgttcaat
ggtgtatttaatgatctgtcagtacagcagtgttgtgctttagtcagctgttttgtgttt
gatgaaaaagctaatgaaatgcctaaattaacagaaacattatcagggcctcttagaatc
atgcaagatactgcaagaagaatagctcgtgtgagtagggaagctaagattgatgttgat
gaggaacaatatgtagaatcattcagaccccacatgatggatattgtaaatgcttggtgt
aatggctgtacctttggacagatttgtaaaatgactgaagtatttgaaggcaatattatc
cgttgtatgagacgattagaggaaaccttacgacaaatgtgtcaagcttctaaagctata
ggtaatacagagctggaaaataaatttgctgaaggaattaggaggataaaaagagacatt
gtgtttgcagcaagtttatatttgtga

DBGET integrated database retrieval system