Mytilus californianus (California mussel): 127727041
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Entry
127727041 CDS
T08804
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
mcaf
Mytilus californianus (California mussel)
Pathway
mcaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127727041
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcaf03019
]
127727041
03041 Spliceosome [BR:
mcaf03041
]
127727041
03009 Ribosome biogenesis [BR:
mcaf03009
]
127727041
03016 Transfer RNA biogenesis [BR:
mcaf03016
]
127727041
Enzymes [BR:
mcaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127727041
Messenger RNA biogenesis [BR:
mcaf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
127727041
Spliceosome [BR:
mcaf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
127727041
Complex C
U4/U6.U5 tri-SnRNP related factors
127727041
Ribosome biogenesis [BR:
mcaf03009
]
Eukaryotic type
Pre-60S particles
Helicases
127727041
Transfer RNA biogenesis [BR:
mcaf03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
127727041
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
AAA_22
Zot
Motif
Other DBs
NCBI-GeneID:
127727041
NCBI-ProteinID:
XP_052090399
LinkDB
All DBs
Position
Unknown
AA seq
1028 aa
AA seq
DB search
MAEDFAEDLFNVFDQDTATKVSPLESSINDKSDEQRTDNLLQSIVGTKRPANSVDVEEDN
EEPKMKKIKSLADDAGSTEVMPRIQVHTVETAEACLHEVALPPDAEFVPLTKMPDTLAKE
YPFILDPFQKEALLCLENNQSVLVSAHTSAGKTVVAVYAIAMSLQQKQRVIYTTPIKALS
NQKYRELYEEFQDVGLMTGDVTINPTASCLIMTTEILRSMLYRGSEIMREVAWVIFDEIH
YMRDKERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTDYRPTP
LQHYIFPAGGDGIHLVVDENGEFREENFNTAMSVLRDSGDAAKGDQRGRRGGFKDNESNC
YKIIKMIMERNFAPVIVFSFSKKDCEAYALQMSKLDFNTEEEKGLVDEVFNNAIDALSDE
DKKLPQVEAVLPLLRKGIGIHHGGLLPLLKETIEILFSEGLLKALFATETFAMGLNMPAR
TVLFTSARKFDGKDFRWVTSGEYIQMSGRAGRRGIDDRGIVILMVDEKMSPQAGKQIVKG
LPDYLNSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNYAAIPDLFDKLRRMEVKYGA
IEVPNEDHVSAYYKIRQQLDNLGSDLLTFIQKPQYLLPFLQPGRLVKIKNGNDDFGWTVV
VNIQKKSNQSKSTQDSGPVYVAEVLAHLTKECARSRNSANIKPCPAGERGEMQVIPVLSH
LIQQISAVRLYIPQDLRPIDNRQSVLKSIQEVEKRFPDGVPLIDPIEDMGIKEKGLKECV
KKIEAFEHRMYSHPLHKDPKLEELYQLYERKARVGADIKNLKTELKKKKSLLQMDELKCR
KRVLRRLGYCTASDVIEMKGRVACEISSGDELLMTELLFNGVFNDLSVQQCCALVSCFVF
DEKANEMPKLTETLSGPLRIMQDTARRIARVSREAKIDVDEEQYVESFRPHMMDIVNAWC
NGCTFGQICKMTEVFEGNIIRCMRRLEETLRQMCQASKAIGNTELENKFAEGIRRIKRDI
VFAASLYL
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagacttcgcagaagacctttttaatgtgtttgaccaggatacagcaactaaa
gtatcccctttagagagttcaattaacgataaatctgatgaacaaaggactgataattta
ctgcagagcattgttggaacaaagagaccagcaaattctgttgatgtagaggaagataat
gaagaaccaaaaatgaaaaagatcaagagtttagctgatgatgcaggctctacagaagta
atgccaagaattcaggtccacacagtagagactgcagaggcttgtcttcatgaggttgca
ttacccccagatgctgagtttgtgcctttaactaagatgccagataccttggccaaagag
taccccttcattttagatccttttcagaaagaggctttattatgcttagaaaacaaccaa
tcagttctagtatcagcccacacatctgctgggaaaacagttgtggcagtgtatgccata
gccatgtcattacaacagaagcagagagtgatatatacaacaccaatcaaagctttaagt
aaccagaaatatcgagagttgtatgaggagttccaggatgttggtctgatgacaggtgat
gttaccattaaccctacagccagttgtcttataatgactacagagattttgagaagtatg
ttatacagaggatcagagattatgagagaagtggcatgggttatctttgatgagatacat
tacatgagagataaagagagaggagttgtatgggaggaaaccattatattattaccagat
aatgtccattatgtatttctgtcggccaccataccaaacgctagacagtttgctgaatgg
atatgtcatttacataaacagccatgtcatgtagtatatacagattacaggcccacacca
ttacagcattacatattccctgctggtggagatggaatacatttagtggtagatgaaaat
ggagagtttagagaagagaattttaacacagcaatgtctgtgctaagagattctggtgat
gctgcaaagggtgaccagaggggaagaagaggaggttttaaagataatgagtcaaattgt
tacaaaataataaagatgataatggaaagaaattttgctccagtgattgtgttcagcttc
agtaagaaagattgtgaagcgtatgcattgcagatgtccaagttagattttaatacagag
gaagagaaaggtcttgtggatgaggtgtttaataatgctatagatgctttatcagacgaa
gataagaaactacctcaggtagaggcagtgttacctctgttgaggaaaggtataggtata
catcatggtggattgttacctctgttgaaagaaaccatagaaatcctcttctctgaagga
ttattaaaggccttatttgctactgaaacctttgccatgggattgaacatgcctgccagg
acagtattgtttacaagtgctaggaagtttgatggtaaagacttcagatgggtaacatct
ggagagtatatacaaatgagtggtcgagcaggaagaagaggtattgatgacagaggtatt
gttatcttaatggttgatgaaaaaatgagccctcaagctggtaaacagattgtcaagggt
ctgccagattacctaaactcagcatttcatctgacctacaacatggtgttgaacttgtta
cgagtggaagaaataaatccagaatatatgttggagagatctttttatcagttccagaat
tatgcagcaatacctgatttgtttgataaacttcgaagaatggaagtgaaatatggcgca
attgaagtacctaatgaagaccatgtgtcagcatattataaaatccgtcaacagttagac
aacttaggcagtgatttactgacatttatacagaaaccacaatatttactccctttctta
cagcctggtaggcttgtgaagattaagaatggaaatgatgattttggttggacagttgta
gtaaatattcagaaaaagtctaaccagagcaagagtacacaagattccggtcctgtatat
gtagctgaagtgttagcacatcttactaaagaatgtgcaagaagtaggaactcagcaaat
atcaaaccatgccctgctggtgaaagaggagaaatgcaggttattccagtattgtcacat
ttaatacaacaaataagtgctgtcagattatacataccacaagatttacgtcccattgat
aacagacaaagtgtgctgaagtcaatacaggaagtggaaaagagatttccagatggagta
ccattgattgatcctatagaagatatgggtataaaagaaaaaggtctgaaagaatgtgtc
aagaaaatagaggcatttgaacacaggatgtactcccatcctttacacaaagaccctaaa
ttagaggaattatatcagctgtatgagagaaaagctagggttggtgctgacataaaaaac
ttaaagacagaattaaaaaagaagaaatcattattacaaatggatgaactgaaatgtaga
aagagagtattaagaagattgggatactgcacagcatcagatgttatagaaatgaaaggg
agagtagcttgtgaaatcagcagtggtgatgagttattaatgacagaattgttgttcaat
ggtgtatttaatgatctgtcagtacagcagtgttgtgctttagtcagctgttttgtgttt
gatgaaaaagctaatgaaatgcctaaattaacagaaacattatcagggcctcttagaatc
atgcaagatactgcaagaagaatagctcgtgtgagtagggaagctaagattgatgttgat
gaggaacaatatgtagaatcattcagaccccacatgatggatattgtaaatgcttggtgt
aatggctgtacctttggacagatttgtaaaatgactgaagtatttgaaggcaatattatc
cgttgtatgagacgattagaggaaaccttacgacaaatgtgtcaagcttctaaagctata
ggtaatacagagctggaaaataaatttgctgaaggaattaggaggataaaaagagacatt
gtgtttgcagcaagtttatatttgtga
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