Mytilus californianus (California mussel): 127727935
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Entry
127727935 CDS
T08804
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2-like
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
mcaf
Mytilus californianus (California mussel)
Pathway
mcaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127727935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcaf03019
]
127727935
Enzymes [BR:
mcaf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
127727935
Messenger RNA biogenesis [BR:
mcaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127727935
mRNA degradation factors
3'-5' decay
Pan complex
127727935
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH_1
PAN2_N
RNase_T
UCH
Beta-prop_WDR3_2nd
Vfa1
Beta-prop_THOC3
WD40_CDC20-Fz
DUF5613
Beta-prop_WDR3_1st
Motif
Other DBs
NCBI-GeneID:
127727935
NCBI-ProteinID:
XP_052091055
LinkDB
All DBs
Position
Unknown
AA seq
1294 aa
AA seq
DB search
MDYRGMQMPHGFPPPQMQGRMGEGMMNQQRDMMGGNMMNQPPPGAMMNPQMMPEHFNPNQ
MEGFFPGAAQGLTEYHDLTSVLVDGGDRFGVSALTFDKQDLLWMGNSGGHVTGYYGLEMQ
KYTSFQVHMTEDIRQMIPIQRGILSLTRSTLNCSLRRGLSLFNYKSPCMQEMQCMIMTSP
NTVLMGGHQTKVLQLDIEGMREIRQVDVPEPGCAIFRSSNKYICAGDTSGKVRLYDPATL
RAEHVLDAHNGTLSDFDLQGNLLVTCGFSARQNQMTVDRFLMVYDMRVMRAMAPIQIIMD
PMFLRFVHIYSNKLMIVSQAGQFQIIDTNSLAPTPLSMQPVNTHGSFITSFDISETCHVL
AFGDSGGYLHEFASGEHPVFNTFPQPTEFADPTEQLQFMHINDEMTPYSVIPMCYPENGK
MLSDWPDHLAQNVYRKPMPVDNEILRSMKVQHNVGYAKLPQGSGIGVNQIPYNIGNDKKG
SKKGKSVPESPIGRGEDPFVVVPKRYQKVDLKYSKLGLEDFDFRHYNKTHFAGLETGIPN
AYCNCMLQVLYYIEPLRVALLNHLCKKEFCLSCELGFLFHMLDSQKGQTCQATNFLRAFR
TIPEASALGLVLSENEENESRINLLRLIQSWCRFIFHQVHSEAGKKVLVEDCKKIEEAAA
DEAEDLKADKDDKPSTAESTPPKSKKKKKKKGKKKGKDQADDDKSDGKREDDEEKDKESI
SPDQSVNLEEERFEELSIISELFGMRTNTTLKCRCGQEMEKVSDTTLVNLHYPDCSPPGH
NKPPVRFTFAEVVKHSLSLEQNTQAWCNSCEKYQPHMQSKVIRNIPDILALNCGMENIRD
LEFWKIQQMLIKQKREEEGSSQSYSMMSSQMPVMCRYGRACTRKGCRFRHETDLKSELAD
MPAVNPDEDPDLVWIPFVLKVILGPDGKVDIEELPEDSFRPKYEDPCVKYYDLYATVGHI
KDQKNGNTVVSQIFVGETFHQRKEGVTCTQWYLMNDFSITPIEKHEATNFNMDWKVPCTI
FFVKKNIVKCYDTQVKNPISEDVLYDDNCLVSPERRKITFTTLIDEERPKEKDVVGLDAE
FVSLNQEESELRSDGTRSTIKPSHLTAARITCLRGQGDQVGEPFIDDYISTQEQVVDYLT
QYSGIKPGDLDPSVSSRYLTTLKSTYLKLRYLVQSGVTFIGHGLKKDFRVINLYVPKNQV
VDTVELFHLPRQRMISLKFLAWYFLKINIQSATHDSVEDARTAIQLHKKYKEFAAEGSDN
VRAKIKEMYEYGRKIQWKIPDVEEEDADNQVAML
NT seq
3885 nt
NT seq
+upstream
nt +downstream
nt
atggattatcgaggcatgcaaatgcctcatggcttcccaccaccacaaatgcaaggaagg
atgggagaaggaatgatgaaccaacagagggatatgatgggtggaaatatgatgaatcag
cctccaccaggagctatgatgaacccacagatgatgccagaacatttcaatccaaatcaa
atggagggttttttccctggagcagcacaaggacttactgaatatcatgacttaacaagt
gtgttggtggatggaggggacaggtttggtgtctctgccttgacctttgataaacaagat
ctattatggatgggcaattcagggggtcatgtaacaggttactatgggttagaaatgcag
aagtatacatcatttcaagtacacatgacagaagacattcgacagatgataccaattcag
cgtggaatactgtctctgacaagaagtacactgaattgttcactacggagaggtctaagt
ttgttcaattacaagtccccctgtatgcaggagatgcaatgtatgatcatgaccagtcct
aatacagtcttgatgggaggacaccagactaaggtcttacaattggatattgaaggcatg
cgagaaatacgacaggtcgatgtgcctgagcctggatgtgcaatattcagaagttctaac
aagtatatctgtgctggagacactagtggaaaggtacgtttgtatgatcctgccacctta
agagcagaacatgtccttgatgctcataatggaactctgtcagactttgatctacaagga
aatttattagttacttgtggtttctcagcaagacagaaccaaatgacagttgataggttt
ctaatggtatatgacatgagagtgatgagagccatggcaccaatacaaatcattatggat
cccatgttcctcagatttgtacacatatatagtaataaacttatgatcgtgtcacaggca
gggcagtttcagataatagacactaattctttggcacctacaccactgtcgatgcaacct
gttaatacccatggcagcttcattacaagctttgatatctcagagacatgtcatgttttg
gcatttggtgattcaggaggatatcttcatgagtttgcctcaggggaacatccagttttt
aatacttttccccagcctacagaatttgctgatcctacagaacaattacagttcatgcac
ataaatgatgagatgacgccttactctgtgattcctatgtgttacccagaaaatgggaaa
atgctatctgattggccagatcacttagcacaaaatgtgtacaggaaacctatgcctgtg
gacaatgagatacttagaagcatgaaagtgcaacataatgttggctatgctaaattgcca
cagggaagtggaataggcgtcaatcaaattccatacaacattgggaatgataaaaagggg
tccaagaaagggaaatctgttcctgaatctccaataggtagaggtgaagatccatttgta
gttgttcccaagagataccaaaaagtagacctgaaatactccaagttaggattagaagac
tttgacttcagacattacaataaaacacactttgctggtttagaaactggtatccctaat
gcttactgtaattgtatgttgcaggttttgtactatatagagccattgcgagttgccttg
ttgaatcatttatgcaagaaggaattctgtctttcttgtgaattgggatttttgttccat
atgttagattcacagaaaggccagacatgccaagcaacaaattttctacgagctttccgt
accataccagaagcatcagctttaggacttgttttgtcagaaaatgaggaaaatgaaagt
cgcataaacttgcttcgactgattcagagctggtgtcggtttatatttcaccaagttcat
agtgaagcaggtaaaaaagtattggttgaagattgtaagaaaattgaagaggcagccgca
gatgaagcagaggacctaaaggcagacaaagatgacaagccttccactgcagagtcaacc
ccaccaaagtctaaaaagaaaaagaagaaaaagggaaaaaagaaaggaaaagatcaagca
gatgatgataagtctgatgggaagagagaagatgatgaggaaaaagacaaagaatcaata
tctccagatcagtctgtcaatcttgaggaagaaagatttgaggagctttctatcatttct
gaattatttggaatgagaacaaacacaacattaaaatgtcgctgtggacaggagatggaa
aaagtttctgatacaacacttgtcaatcttcattatcctgactgctcaccaccaggacat
aataagccccctgtaaggttcacatttgcagaggttgtaaaacacagtctgtcattagaa
caaaatacacaggcatggtgtaattcttgtgaaaagtaccaaccacatatgcagtctaaa
gtaatcagaaatattcctgacattctggcattaaactgtggtatggagaacatcagagat
ttggaattctggaaaattcaacaaatgttgattaaacagaagagagaggaagagggatcg
tctcagtcatactcaatgatgtcatcacagatgcctgttatgtgccgttatggtagggca
tgtacaaggaaaggctgccgatttagacatgagactgacttgaagagtgaactagcagat
atgccagcagttaaccctgatgaagacccagacttagtttggataccatttgtgttaaag
gtcatcctagggcctgatgggaaagtagacatagaggagcttcctgaagattcattcaga
ccaaagtatgaagatccttgtgttaagtattatgacctatatgctacagttggtcacatc
aaggaccaaaagaatggaaatactgtggttagtcaaatctttgttggggagacatttcac
caacggaaggaaggtgttacctgtactcagtggtatttaatgaatgatttctctatcaca
cctattgaaaagcatgaggctacaaattttaacatggactggaaagtaccatgtaccatc
ttttttgttaagaaaaatattgtgaagtgctatgatacacaagtgaaaaatcctatatca
gaagatgtcttgtatgatgacaattgtctagttagtcctgaaaggaggaagataactttc
acaaccctcatagatgaagaacgccccaaggaaaaggatgttgtaggtttggatgctgaa
tttgtctctttgaatcaggaagaatctgagttgagaagcgatggtacaaggtctacaatt
aaaccaagtcaccttacagcagctagaattacttgtcttagaggacaaggtgaccaggtt
ggagaaccatttatagatgattacatctctacacaagaacaggttgtggactatttgaca
cagtattctggtataaagcctggtgatcttgatccttctgtatcatcacggtacttgaca
acgcttaagtccacatacctgaagttgagatatctggtacagtctggagtaacatttatt
ggtcatggattgaaaaaagatttcagagtaatcaatctttatgtaccaaagaatcaggta
gttgacacagtggagttattccatttaccacgacaaagaatgatctcccttaaattctta
gcatggtatttcttaaaaataaatattcagtcagcaacccatgactcagttgaagatgcc
aggacagcaattcagctacacaagaagtacaaggagtttgcagcagaagggtcagacaat
gttagagctaagattaaggaaatgtatgaatatggcaggaaaattcagtggaagattcct
gatgttgaggaggaggatgcagataatcaagtggcaatgttgtaa
DBGET
integrated database retrieval system
