KEGG   Mytilus californianus (California mussel): 127727975
Entry
127727975         CDS       T08804                                 
Name
(RefSeq) roquin-1-like isoform X1
  KO
K15690  RING finger and CCCH-type zinc finger domain-containing protein
Organism
mcaf  Mytilus californianus (California mussel)
Brite
KEGG Orthology (KO) [BR:mcaf00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:mcaf03000]
    127727975
   04121 Ubiquitin system [BR:mcaf04121]
    127727975
Transcription factors [BR:mcaf03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    127727975
Ubiquitin system [BR:mcaf04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    127727975
SSDB
Motif
Pfam: Roquin_1_2-like_ROQ ROQ_II zf-CCCH zf-RING_5 zf-RING_UBOX zf-CCCH_UNK zf_CCCH_4 zf-CCCH_4 zf-C3HC4_4 zf-CCCH_DUS3L zf-RING_10 zf-C3HC4_2 zf-C3HC4
Other DBs
NCBI-GeneID: 127727975
NCBI-ProteinID: XP_052091069
LinkDB
Position
Unknown
AA seq 1141 aa
MPIQIPQWTEFLSCQVCFHVFDEGHHRPISLACGHTVCRTCLCNLPQKRCPFDQNTIAKD
ISELPVNYALLQLVGAAVPDTDTLPSEGISDHVKHYNASKRCIEELALHLKPVSAADQKL
NTTCPSSNGEPNNGILSRPMQRKLVTLVNCQLVEDEGRARAIRAARSLGERTVTELILQH
QNPQQLSANLWAAVRARGCQFLGPAMQEEVLKLILLALEDGSALSRKVLVLFVVQRLEKH
YPQASKTAIGHVVQLLYRASCFKVSKRDEESSLMQLKEEFRSYEALRREHDSQIVQIAME
AGLRIAPDQWSSLLYGDTSHKSHMQSIIDKLQTPQSFSQSVNELIITLQRTGDPCGLQRL
HPHLEFLASVDPNPDAPSPSWENLEAVMKAIKTVVQGLIDFIQSNGSKHLEILTLPNLRY
KTSMCRDLVQRGTCPRGGNCTFAHSQDELEKYRARNKRLGKGQFLPTTTSALTPKEKLAL
ESVTKTTAEKLLAAEISKSGSSIDTISTDKQGTITSPSGLPQKLAVTHEPSCLPGAMTNM
TISTSQASMVPTSMTPHIQTMTGSMGPHVSSFTQNRSQGCYPPEYYQTCQSTVPMMAMPR
MMSYGPTCYQHQTMPPGYRPPVYGMMPPQQCPYQTGMEYNMASRCPPQQQPPPPYPGSCI
SYDMCQQAHSNLNPYAEPFMIGPHPSGQQFCCHSDDHRCLVPPHGQAQILTNLHQRRTEI
LTRLHKCNSTTSKKSWSGAETTFAEWGSEKSIGRMTGSSQSIPDAASATKIPSVASRETH
SGWDSDYQNWSMGDNTSSSWTKSKDTRVGSSDIVADCPDVWNEKIVLAVNQGNEQDTGSD
TTDFMLNWLKDIPDDPMPVEQVPIPMQKISKTKRTVFQSSERKSVYAPATSYHQDYQTMA
EKNVKGDINEDEDDIEIDYRRLSIASDGDDIIIPFDSKPIVSKFGPISRVKPKLQKSTDP
VQATADENMVTSVTSSLNRKPQVYPTNRVASRTVNQPISAVLDEDNASACTGYSRIVNYP
PNVKSCVKKEIARLEEKALNANTEDEWLACELQAVELQISLTNKSTANLTSEDLTGTKHW
AKYGYDSPQAGYTEWTDLDKALQAQKIETECLKNRKNQEKEDRLLAQKLVLEELNASGPS
S
NT seq 3426 nt   +upstreamnt  +downstreamnt
atgcctatacagatcccgcagtggacagaatttttgtcctgccaagtttgtttccatgtt
tttgatgaaggacaccatagaccaataagtttagcatgtggtcatacagtatgtagaaca
tgcttgtgcaatttgcctcagaagcgatgtccctttgaccagaacacgatagcaaaggat
atcagtgagctgcctgttaattacgccttattgcagttggttggtgcagctgtaccagat
actgacacactaccatcagaggggatatcagatcacgtcaaacattataatgcatctaaa
cgttgtatagaagagctagcccttcatttgaaacctgtcagtgcagctgaccaaaagttg
aacactacatgtccttctagtaatggtgaaccaaacaatggcattttaagtcgaccaatg
caacgcaagctggtaacgctagtaaactgccaactggttgaagatgaagggagagctcga
gcaatacgagcagctcgttctctgggagaaagaacagtgacagaactgattctacagcat
cagaatcctcaacaactgtcagctaatctatgggcagcagtacgagctaggggatgtcag
tttcttggtccagctatgcaagaagaagtcttaaagttgatacttttagccttagaagat
ggatctgctctatctagaaaagtccttgttctgtttgttgttcagaggttggagaaacac
tatccccaggcttccaaaacagctattggtcatgtagtccaactcttgtatagagcctca
tgttttaaggtgtcaaaaagagatgaagaatcatcattaatgcagttgaaggaagaattt
agatcttatgaagctttaaggagagaacatgactcacaaatagtacaaatagccatggaa
gcaggattgcgcattgctcctgaccagtggtcgtcgttgttatatggtgataccagtcat
aaatcacacatgcagtccattatcgacaagttacagacgccacagtcattttctcagagt
gtcaacgaactgataataacgttacaaagaactggtgatccatgcggtttacaaagatta
catccacatttagagttcctggccagtgttgatcccaatcctgatgcaccctcaccgtca
tgggagaatctggaagctgttatgaaagccatcaagactgttgttcaaggacttatagat
ttcatacaaagtaatggttctaaacatttggagatcttaactttacccaatctcagatat
aagacgagtatgtgtcgtgatttggtacagaggggaacatgtccaagaggtggaaattgc
acttttgctcattcacaagacgagcttgaaaaatatagagccagaaataaaagattagga
aaaggacaatttttaccaacaacaacatcagctttaacacctaaagaaaagttagcattg
gaaagtgttacaaaaactacagctgagaagctattggcagctgaaatatcaaagtctgga
agcagtattgacacgatttcaactgataaacaaggtacaattacatccccttctggactt
ccacagaaactagcagtaacacatgaaccatcatgtttgccaggagccatgaccaatatg
actatttctacaagtcaagcgtcaatggtgcctacatccatgacaccacatatacagact
atgactggatcaatgggacctcatgtttcatcatttacacagaaccgtagtcaaggctgt
tatcctcctgagtattaccaaacttgtcagagcacagttcctatgatggcaatgccaaga
atgatgtcttatggtccaacatgttatcagcatcaaacaatgcctccaggctatcgccca
ccagtttatggaatgatgccacctcaacagtgtccataccaaacaggtatggagtacaac
atggctagccgatgtccaccacaacaacaaccaccacctccatatcctggatcttgtata
tcctatgacatgtgtcagcaagctcacagtaacctgaacccctatgctgaaccttttatg
attggtccacatccatctggtcagcagttctgttgtcactccgatgatcacagatgttta
gttcctcctcacgggcaggctcagattctgacaaacttgcatcaaagaagaactgaaatc
ttgacaaggcttcacaaatgtaattctactactagcaagaaaagttggtcaggggcagag
acaacttttgcagaatggggctcagagaaatcaatcggtagaatgacaggatcgtctcag
tccattcctgatgcagcttcagctacaaagataccatcagtggcatcaagagaaacccat
tcaggttgggatagtgattaccagaattggtctatgggtgataatacatcctcatcgtgg
actaaaagtaaagatactcgtgttggatcctctgacattgtggctgactgtccagatgtt
tggaatgagaaaattgtgctagctgtaaaccaaggaaatgaacaagatactggttccgat
accacagatttcatgttgaactggttaaaggatataccagatgacccaatgccagtggag
caagttcctattcccatgcagaaaatcagtaaaacaaagagaactgtattccagtcttct
gagagaaaatctgtatacgctccagctacaagttaccaccaggattaccaaacgatggca
gaaaaaaatgtcaagggagatattaatgaggatgaggatgatatagagatagattacagg
aggttatcaattgcatcggatggagatgacatcattataccatttgactcaaaacctatc
gtttcaaagtttgggccaatcagtagggtcaaacccaagctacagaagtcgactgatcct
gttcaagctactgctgacgagaacatggtgacatcagtgacatcatcattaaacaggaag
cctcaggtctaccctacaaatcgtgtagccagcagaacagtaaaccaaccaatcagtgct
gtattagatgaagataatgcttcagcttgtacaggatactccagaatagtcaactatcct
ccaaatgtaaagtcttgtgtgaaaaaagagattgcccgtttagaggagaaagcccttaat
gccaatacagaagatgaatggttggcttgtgaactacaagctgttgagcttcaaatatca
ttgacaaataaatcaactgctaacttaacaagtgaagatttaactgggactaaacactgg
gccaagtatggatatgacagtccacaagctggatatacggaatggactgatttggacaaa
gcattgcaggcacagaaaatagagacagaatgtttaaagaatcggaaaaatcaagaaaaa
gaggatagacttctggcccaaaaacttgtgcttgaagaactgaatgcctcagggccatca
tcataa

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