Mytilus californianus (California mussel): 127728272
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Entry
127728272 CDS
T08804
Name
(RefSeq) collagen alpha-1(XI) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
mcaf
Mytilus californianus (California mussel)
Pathway
mcaf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
mcaf00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
127728272
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mcaf00536
]
127728272
Glycosaminoglycan binding proteins [BR:
mcaf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127728272
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
127728272
NCBI-ProteinID:
XP_052091516
LinkDB
All DBs
Position
Unknown
AA seq
1770 aa
AA seq
DB search
MTGIVSGTMRKSLHSYSYSASSFLKRSSLILSPNMEIVFISILCIIPSVLGAVVPFPSGA
TDLLKVANIETKISGTQDGMCPGRDVAYALTGSEELNFQLQDAFPEGISETFTIITTFKQ
GKVDLADGKKKLKIPLLTIYNQEEVREIIGLYVGSRTMFLYSDNTIKNDKPARFNFNTND
DSWHRVAIVVQGQEITAWLDCDAQEPKKLKRDIPTQFSREGLVLIGRDFAESPLFNGLIQ
DLAVLPGDHGMKHCIEFCPECMKGPGNGVKSEQPPLPVFTEDGGMYVMGGDKVGGGMPLL
GKDGAGLQMVDKNGAGLQMVDKNGQGLPLTENETFVPYSPMPGGDKNGGMFVDGGLGIPV
VGGDKKTGGQFVVGDKVYDKEGYIVGKDGSLLVEYDAAAGVSYAYRYGPPGPPGPRGPAG
PQGPKGDSGYSGRDGVPGSSGLPGAPGHVFVIPMNWDQKRAPQAEAFRQMLSQHMMSMHG
ANGPQGMTGNSGPVGPPGESGLKGDIGHPGEQGPQGGRGAPGPQGNPGKRGRVGRDGERG
AMGSQGDKGDLGYNGMPGMNGHKGDRGHLGASGTPGPVGPEGPQGDIGEPGPVGPPGELG
PRGFMGTRGRGGPMGSPGVPGTEGPPGPKGNEGTVGAPGAPGNGGAPGPTGPPGPPGPMG
PPGISGPAGKPGLPGLPGPLGPAGLPGREGEPGLKGDQGSQGMQGIIGYPGPRGIKGDTG
NTGPIGIKGDMGGLGMDGMKGDYGYKGDKGLKGTPGPLGYEGIEGTKGDPGQRGEVGEQG
SQGEKGRQGMPGITGYPGPTGPKGPTGRHGRRGRRGTRGKSGKPGPVGDRGEPGPQGPNG
ERGKQGTPGPLGPKGDSGVPGPPGFQGEQGIQGPPGPPGLMGPFGPPGLPGKEGMFGPPG
ERGESGLPGQPGLPGQAGVMGASGASGEPGAPGDRGSPGNPGPPGETGVPGNTGERGEQG
NSGAQGETGVMGPPGPPGFQGPRGYPGPQGKDGPQGPTGQRGIVGSPGEKGSVGLPGSAG
THGPPGQPGAPGQEGQMGTKGDMGVEGQAGLPGPTGPDGQRGYAGPPGPIGSPGQDGDKG
ELGPPGQRGQKGEHGDMGPPGPQGPQGIVGALGPPGPIGEPGIQGIQGPVGMKGAEGPRG
VVGPPGLEGLQGLPGVEGSKGEHGDLGKVGPPGPPGPVGKPGTSGPPGVPGNEGQLGPEG
KQGQKGEQGTPGEPGYRGLDGPNGPQGPTGDKGDSGRQGNQGPAGERGEVGQFGPKGHAG
MPGDPGMPGPPGEQGHKGESGRDGPEGPKGPPGPAGPIGSPGDPGLPGRNGKQGDVGSPG
VPGAAGEVGIKGSQGMKGNSGPRGPAGPPGQPGVQGTSGPRGNPGPVGEAGSTGPPGLPG
EQGLIGPPGPSGSKGERGEKGIKGNTGRVGSPGIIGDPGPKGQPGPVGPPGEKGDRGPLG
QNGPPGIMGVEGMPGSPGQEGPSGPKGEPGLVGPKGNNGPPGPSGPMGPPGEQQAFPAEL
LGRYMATGDKAGVNGRRRRSVPDFQNDMAAMVEDMGSKQVELKEGVTLVVSRLFSQIDQL
RAEVKKIRYPTGQEDSPAPTCRDIQMVNEDAKDGWYWIDPNHGSPSDAIKVWCNMESGGQ
TCVHPLKKSAGVRLKSWPRVKDGNPFFSEMKGGSTIEYPDEVQLAFLRLSSLEASQKFTY
YCKKSIAWFDSETSNYDQAITLEGYNREPIDTSDVSNVNDGCADRSGEGKTIFDVYASDV
SILPIMDFAPKDYGADGQEFGFEAGPVCFY
NT seq
5313 nt
NT seq
+upstream
nt +downstream
nt
atgacagggattgtgtccgggactatgcgaaaatctttacattcatatagttattccgct
tccagtttcttaaagcggagttcattgatattatcgccaaacatggaaatagtttttatt
tcaattctttgtataattccatcagttttaggagccgttgtaccgtttccatctggtgca
acagatttattaaaggtagctaatatagaaacaaaaatatcaggaacccaagatggcatg
tgtccaggtagagatgtggcttatgcccttacaggcagtgaagagctcaactttcagtta
caagatgcatttccagagggtatttcagaaacattcacaatcatcaccacatttaaacag
ggaaaagttgatcttgctgatgggaagaaaaaattgaaaattcccttgttgaccatctat
aatcaggaggaggttagagaaatcattggtctgtatgttggttcacggacaatgttcctc
tatagtgacaacacaatcaaaaatgacaagccagctagattcaactttaacactaatgat
gatagttggcatcgagttgctatagtagtgcaaggtcaggagattacagcttggttagat
tgtgatgctcaagagccaaagaaattgaaacgagacattccaacacaatttagcagagaa
ggacttgtccttattggcagggattttgcagaatcacccttatttaatggattaatccaa
gatctagcagtgctaccaggagaccatggtatgaaacattgtatagagttctgtccagaa
tgtatgaagggtccaggtaatggcgttaagtctgaacagccaccacttcctgtcttcact
gaagatggaggtatgtatgttatgggcggtgacaaagttggaggtggaatgcctttactt
ggtaaagatggagctggacttcaaatggttgataaaaatggagctggacttcaaatggtt
gataaaaatggacaaggacttcctttaacagagaatgaaactttcgtgccatattctcca
atgccagggggagataaaaatggaggcatgtttgtggatggtggattaggaataccagtt
gtgggtggtgacaaaaagactggagggcaatttgttgttggagataaggtttacgataaa
gaaggatatatagttggaaaagatggcagcctgctagtagaatatgatgcagcagctgga
gtgtcctatgcttacagatatggcccacctggaccaccaggcccaagaggaccagctgga
ccacaaggtccaaaaggagattcaggatattccggcagggacggagttccaggatcatct
ggtctaccaggagctccaggccatgtttttgttattcctatgaattgggaccaaaagagg
gctccacaagctgaggcattcagacaaatgttatcacagcatatgatgtctatgcatgga
gcaaatggacctcagggtatgactggaaattcaggacctgtgggacctccaggagaatca
ggattaaagggagatattggacacccaggagaacagggacctcaaggaggccgtggtgca
ccaggaccacagggtaatccaggaaaacgaggaagagttggaagagacggtgaaagagga
gctatgggatcacaaggagacaagggagatttaggttacaatggaatgccaggaatgaat
ggacataaaggagataggggtcatcttggagcctcaggaacacctggaccagttggacca
gaaggtccacagggagacattggcgagccaggacctgtggggccaccaggggaattgggt
ccaagaggttttatgggaacaagaggaagaggtggaccaatgggaagtcctggtgtacca
ggaactgagggaccacctgggccaaaaggcaatgagggaacagtaggagcaccaggtgcc
cctggtaatggtggagcaccagggccaactggtccaccaggaccacctggaccaatggga
ccaccaggcatttctggtcctgcaggaaaacctggacttcctggtttgcctggaccactt
ggaccagctggattacctggcagagagggcgaacctgggcttaaaggagatcagggatca
caaggaatgcagggcattattggttacccaggaccaagaggaattaagggagatacaggt
aacacaggaccaattgggatcaaaggtgacatgggtggcctaggtatggatggcatgaaa
ggagactatggatataaaggtgataaaggacttaaaggaactcctggaccacttggatat
gaaggaattgaaggaacaaagggagatccaggacaaagaggagaagttggagaacagggt
agtcaaggagaaaagggacgacaaggcatgccaggtataacaggataccctggaccgaca
ggaccaaagggaccaactggtcgtcatggacgccgtggaagaagaggcacaagaggaaaa
tctggaaaacctggaccagtcggagaccgtggagagcctggaccacagggaccaaatggt
gaaagaggaaagcaaggaacaccaggtcccttgggaccaaagggagattcaggtgtacct
ggtccaccaggttttcagggagaacagggaattcaagggcctcctggaccaccaggtttg
atggggccttttggtccaccgggattgccaggaaaagagggaatgtttggaccccctgga
gaaagaggtgaatcaggtttgccaggacagccaggattgccaggacaagctggtgttatg
ggtgcatcaggagcttcaggagaaccaggtgctccaggagatagaggctccccagggaac
cctggtccaccaggagaaactggcgtaccaggaaatactggagaaagaggagagcaagga
aactctggagcacaaggagaaactggagtgatgggtcctccaggcccacctggttttcaa
ggacccagaggatatcctggaccacagggaaaagatggaccccaaggaccaacaggacaa
agaggaatagtagggtcacccggagagaaaggatcagtaggcttgccaggatctgcagga
acacatggacctccaggtcaaccaggagccccaggacaagagggacagatgggaactaaa
ggagacatgggtgttgaaggccaggcaggcttaccaggaccaacaggacctgacggacaa
agaggatacgctggaccaccaggaccaatcggctcacctggacaagatggagataaggga
gaacttggaccaccaggacaaaggggacagaaaggagaacatggtgatatgggcccacct
ggacctcaaggaccccagggaatagttggtgcacttggaccaccaggaccaattggtgag
ccaggaattcaaggaatccaagggccagttggaatgaagggtgctgagggaccaagagga
gtagttggacctccaggattagagggactgcaagggttgcctggagtagaaggatctaag
ggagagcatggagatcttggaaaagttggaccacctggcccacctggacctgttggaaaa
ccaggaacatctggaccaccaggtgttcctggaaacgaaggccaattaggacctgaagga
aagcaaggacagaaaggagagcagggaactccaggtgaaccaggatacagaggattagat
ggaccgaatggacctcaaggaccaacaggagacaagggtgatagtggaagacaaggtaat
caaggaccagctggtgaaagaggggaagttggacaatttggacctaaaggccatgctggt
atgcccggagatccaggaatgccaggaccacctggagaacaaggtcacaaaggagagtct
ggcagagatggaccagaaggacctaaaggaccaccgggaccagcaggacctattggctct
cctggtgacccaggattacctggaagaaatggaaaacagggagatgtgggatcacctggt
gtacctggggcagctggagaagttggaattaaaggaagtcaaggaatgaaaggaaattct
ggaccaagaggaccagctggacctccaggccaaccaggagtacaaggaacttcaggacct
agaggaaatccaggccctgtgggagaagctggatccacaggaccacctggtttaccagga
gaacagggacttattggaccaccaggaccatcaggctcaaagggagaaagaggagagaag
ggtataaagggaaatactggtagagttggatcacctggtataattggtgatcctggacca
aaaggacaacctggacctgttggcccacctggggagaaaggagatcgtggacctttaggt
caaaatggaccaccaggaataatgggagtggaaggcatgccaggctcaccaggccaagaa
ggaccttctggaccaaaaggtgaaccaggacttgttggtccaaagggaaataatggtcca
ccgggtccatctggaccaatgggaccaccaggtgagcaacaggccttcccagctgaactt
ctaggtagatacatggccactggtgacaaagctggtgtaaatggccgtagacgaaggtct
gttccagacttccagaatgatatggctgctatggtagaagacatgggttcgaaacaggtt
gaactgaaagaaggagtaactctggtagttagtagactgtttagtcagatagaccaacta
agagcagaggtaaagaagatcagataccctactggacaagaagacagcccagcaccaacc
tgccgtgacattcaaatggttaatgaagatgctaaagatggttggtattggattgatcct
aatcatggttctccaagtgatgccatcaaagtctggtgtaacatggagtctggaggccag
acttgtgttcatcctttgaaaaaatcagcaggggtacgtcttaaatcttggccaagagta
aaagatggcaatccattctttagtgaaatgaaaggaggttcaacgattgaatatcccgat
gaagtccaattggcgttcctccgtttaagtagtctggaagcatcccaaaagtttacttac
tattgtaagaaatcaatagcatggttcgactcagaaacgtcaaattatgaccaggccatc
acacttgaaggttacaatagagaaccgatagacacctctgatgtcagcaatgtcaatgat
ggatgtgctgatcgttctggagagggtaaaactatatttgatgtctatgcctctgatgtt
tccattctaccaatcatggactttgcacccaaagattatggagcggatggccaagagttt
ggatttgaagcaggacctgtttgcttctactag
DBGET
integrated database retrieval system
