KEGG   Mytilus californianus (California mussel): 127729226
Entry
127729226         CDS       T08804                                 
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
mcaf  Mytilus californianus (California mussel)
Pathway
mcaf04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:mcaf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    127729226
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:mcaf04121]
    127729226
Enzymes [BR:mcaf01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     127729226
Ubiquitin system [BR:mcaf04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    127729226
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     127729226
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_EML_2 WDR55 Beta-prop_EIPR1 Beta-prop_RIG_2nd zf-C3HC4_2 EIF3I Beta-prop_TEP1_C Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_WDR19_1st WD40_MABP1-WDR62_2nd zf-C3HC4 Beta-prop_Vps41 ANAPC4_WD40 zf-RING_2 Beta-prop_DCAF4 Beta-prop_WDR90_POC16_2nd zf-RING_UBOX WD40_like zf-C3HC4_3 Beta-prop_WDR35_TULP_N Beta-prop_WDR75_1st WD40_RFWD3 Beta-prop_HPS5 zf-C3HC4_4 zf-RING_5 Beta-prop_IFT122_1st RING_XB3-XBAT31 WDR90_beta-prop_4th Beta-prop_DCAF12 Beta-prop_IFT140_1st zf-RING_10 zf-rbx1 FapA TRAF3_RING U-box Aconitase_B_N zf-Nse
Other DBs
NCBI-GeneID: 127729226
NCBI-ProteinID: XP_052092913
LinkDB
Position
Unknown
AA seq 619 aa
MAGRTQQQADRTRRKRSRTLPPVYTGISGSFEDKDNDFVCPICFDIIEEAHMTKCGHTFC
YKCIKQSLENSNRCPKCNYLIESSDQIFPNFTLNELIMKHRGKLEEKKIKVENNIHGGST
SWYDMITEDSLDLPNVNNLLEILQTKKQKLEADNQLSQHMILKDFLHNVRQKKQEQLDQL
QKELSLIDEDLSKVEVMISETKRKFSSFSDHLVPNGFDVATDNGSQDGFNGSKNAGKPFF
NTTHAARRKKVDQHYEDLEQCYFTIRQKKLFEFEDKSNGLDEFTESLSKFTRFSSFRPLA
TLSYASDMYNGSSNIVSSIEFDRDCDYFAIAGVTRKIKIYEYDTVIKDAVDIHYPVHEMV
CNSKISCVTWSSYHKNLLASSDYEGTITLWDAFTGQTSKIFQEHEKRCWSVDFNRMDPKL
LASGSDDAKVKLWSTNTDHSIACLEAKANVCCVYFNPESRYHLAFGSADHCVHYYDLRNT
KQAVMVFKGHRKAVSYCKFLNSQEIVSASTDSQLKLWEVSKPSCLRTFKGHTNEKNFVGL
ATDGDYIACGSENNSLFVYYKGLSKQLLTFKFETVKSVLEKNKKEEEVNEFVSAVSWRPG
SNVMVAANSQGTVKVLEMV
NT seq 1860 nt   +upstreamnt  +downstreamnt
atggctggaagaactcagcagcaagctgatcgtacaagacgaaaaagaagtcgaactctg
ccacccgtgtataccggaataagtgggtcatttgaggacaaagacaatgattttgtttgt
ccaatatgttttgatatcatagaagaagctcacatgaccaagtgtggtcatacattttgc
tacaaatgtatcaaacaaagtttagagaatagtaatagatgtcctaagtgtaactattta
atagagagttcagatcagatctttccaaacttcacattgaatgaattaataatgaaacac
agaggaaaactagaagagaaaaagataaaggtagaaaataatatacatggaggaagtaca
tcttggtatgacatgatcacagaagatagtttagatctgccgaatgtcaataacctactg
gagattttacagaccaagaaacaaaaacttgaagcggacaatcagctatcccagcacatg
atattgaaagactttttacataacgtcagacagaaaaaacaagagcaactggatcaactt
cagaaagaattatcattaatagatgaagatttatctaaagtggaggtgatgatttcagaa
acaaagagaaaattttcatcattttcagatcatctagttcctaatggatttgatgtggct
acagataatggtagtcaagatggttttaatggtagtaaaaatgctggaaaacctttcttt
aacacaacacatgcagcaagacggaagaaagtggaccagcattatgaagatttagaacaa
tgttatttcacaatacgacagaaaaaactgtttgaatttgaagacaagagcaatggttta
gatgaatttactgaaagtctttcaaaatttactagatttagttcattccgaccattagcc
acacttagttatgctagtgatatgtataatggatctagtaatattgtatccagtatagaa
tttgatagagattgtgattattttgctatagctggagttacaagaaaaattaaaatatat
gaatatgatactgtgataaaggatgctgtagatatacattatcctgtacatgaaatggtg
tgcaattctaaaatcagttgtgttacttggagttcataccataaaaatctgctagctagc
tcagactatgaagggacaatcaccctatgggatgcttttacgggtcaaacttctaaaatt
tttcaggaacatgagaaacgatgttggagtgtagatttcaacagaatggatcctaaacta
ttagcttcaggttctgatgatgccaaagtgaaattatggtccaccaatacagatcattct
atagcatgtttagaagccaaggctaatgtgtgttgtgtatatttcaatccagaaagtcgt
tatcatttagcatttggatctgcagatcattgtgttcattattatgatttacggaacacc
aaacaggctgtgatggttttcaaagggcatcggaaggcagtatcttactgtaaattctta
aattctcaggaaatagtttctgcatcaacagatagtcagttaaagctgtgggaggtcagt
aaaccatcctgtctacggacatttaaaggacatactaatgagaaaaactttgttggactg
gcgacagatggtgattatatagcttgtggtagtgagaataattccttgtttgtttattat
aaaggattatcaaagcaactgttgacatttaagtttgagactgttaaaagtgtgctggaa
aagaataagaaagaggaggaagtgaatgagtttgttagtgctgtttcttggagacctggc
tccaatgttatggttgctgccaatagtcaaggaacagtaaaagtgttagaaatggtatag

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