Mytilus californianus (California mussel): 127729436
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Entry
127729436 CDS
T08804
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
mcaf
Mytilus californianus (California mussel)
Pathway
mcaf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mcaf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127729436
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcaf03019
]
127729436
03041 Spliceosome [BR:
mcaf03041
]
127729436
Messenger RNA biogenesis [BR:
mcaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
127729436
Spliceosome [BR:
mcaf03041
]
Complex B
Other components
Prp19-related factors
127729436
Complex C
127729436
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_12
ARM_TT21_C
PPR
ARM_TT21
NRDE-2
TPR_5
Motif
Other DBs
NCBI-GeneID:
127729436
NCBI-ProteinID:
XP_052093226
LinkDB
All DBs
Position
Unknown
AA seq
844 aa
AA seq
DB search
MPVLMEKQKDIFFEEDDLPYEEDILRNPYSVKCWLRYLEFKKQASRNVVNMIYERALKEL
PGSYKLWYNYLKLRRRQVKGKCINDPAVEDVCNAHERALVFMHKMPRIWLDYCQYLMDQC
RITKTRRTFDKALRALPITQHYRIWPLYLKFAKMYDLPESAVRIYRRNLKLQKENTEDYI
EYLKSIDWLDEAAKRLVNIIDDDSYISKEGKSKHQLWNELCELVAKNPDKVTSLKIEPII
RQGLKRYTDQIGVLWNSMADYYIRGGHFERARDIYEEAIETVLTVRDFTQVFDAYAEFEK
NVIGAKIQTMEETGASDEDDLDLELRLARLENLMDRRLLLLNSVLLRQNPHNVHEWHKRV
TLFKDKPREIINTYTEAVQTVDPKLATGKPHTLWVDFAKFYEKAGQIEDARVIFDKAVKV
PYKHVDDLASVWCEWAEMEIRHDHFDEALKLMQKVTAPPTRKVSYHDESETVQDRVHKSL
KVWSLYADLEESFGTFKTCKAVYDRIIELRIATPQIIINYGLFLEENNYFEEAFKGYEKG
IALFKWPNVYDIWNTYLVKFIERYGGTKLERARDLFEQCLENCPQKFAKAIFLLYAKLEE
EHGLARHAMAVYDRATKAVLPEERYEMFNVYIKRAAEIYGVTYTRPIYEKALEVLPDEQA
REMCIRFADLERKLGEIDRARAIYSHASQICDPRVAPNFWQVWKEFEIKHGNEDTVREML
RIKRSVQAMYNTQVNFMSSQMLAAAAGSKGDNPESTDDMKRLEEKAKQLAEESLRDQPKP
DKNILFVRSNTTDEELGEMTKTTNPDEINIDSDFSSDEDENVEEVQVQHVPTEVFGGLAP
EEDD
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgccagtactaatggaaaaacagaaagatattttctttgaagaagatgatctaccatat
gaagaagatattttacgaaatccatattcggttaaatgttggcttcgttacttggagttt
aagaagcaagcttcgcgaaatgttgttaatatgatttacgaaagagctctgaaagaattg
ccaggaagctacaaattatggtacaattatttaaaactacggagacgacaagtgaaagga
aagtgtataaatgacccagccgtagaggatgtatgtaatgcccatgagagggcgctagtg
ttcatgcataagatgcccagaatatggttggactattgtcagtatttgatggaccagtgt
agaataactaagaccagacgtacttttgacaaagccctcagagctttaccaataacacaa
cactataggatctggcctttatatctgaagtttgcaaaaatgtatgatctgccagagagt
gcagttagaatatacagaagaaatttaaagttacaaaaggagaataccgaagattatata
gaatacttaaaatccattgactggttagatgaggcagctaaacgattggtcaacatcatt
gatgatgacagttacatctctaaagaaggaaaatcgaaacatcagctttggaatgagctc
tgtgaactggttgctaagaatccagacaaagtgacatcattgaaaattgaaccaatcata
agacagggattgaaacgctacactgatcagataggtgtcttgtggaattcaatggcagat
tattacattagaggaggacattttgaaagggcaagagatatatatgaagaggctatagag
acagtattaacagtcagagatttcacgcaagtgtttgatgcttatgctgagtttgagaaa
aatgttattggtgctaaaattcagaccatggaagaaactggagcttctgatgaagatgat
cttgaccttgaacttagattagccagattagaaaatttaatggacagacgattacttcta
ttaaacagtgtgttattaagacagaatccacacaatgtgcatgaatggcacaaaagagta
acattatttaaagacaaaccaagagagataataaacacatacacagaggcagtgcagact
gtggacccaaagttagccacagggaagccacatacgttgtgggtggattttgctaaattt
tatgaaaaagctggacagattgaagatgcaagagtaatatttgataaagcagtaaaggtg
ccgtataaacatgtcgatgatttagcatctgtatggtgtgaatgggcggaaatggaaatc
agacacgaccattttgatgaagcactgaagttgatgcagaaagtaacagcacctcccaca
cgtaaagtttcttatcatgatgagtcagaaacagtacaagacagagtacataaatctttg
aaagtctggtcattatatgctgatttagaggaaagttttggtacattcaagacttgtaaa
gctgtatatgacagaattatagaactacggatcgctacaccacagatcattataaactat
gggttgttcttagaagaaaataattattttgaagaagctttcaaaggctatgagaaagga
attgctttgtttaaatggccaaatgtatacgacatatggaacacgtacttggttaagttt
atagaacgatatggaggaactaaattagaaagagcaagagatttgtttgaacaatgcttg
gaaaactgtccacagaagtttgctaaagctatctttttattatatgccaagttagaagag
gaacatggattagccagacatgctatggctgtgtatgacagagctacaaaagctgtactc
ccagaggaaagatatgagatgtttaatgtgtatataaaaagagcagctgagatttatggc
gtgacttatactcgacctatttatgaaaaagctttagaagttttacctgatgaacaagca
agagagatgtgtataagatttgctgatttggagagaaagttaggagagatcgacagagct
agagctatttattcccatgcatcacaaatctgtgatcctcgagtagctcctaacttttgg
caagtgtggaaagagtttgagattaaacatggtaatgaagacactgtcagggaaatgtta
cgtataaagagaagtgtacaagctatgtataatacacaggtgaacttcatgtcatctcag
atgttagctgcagcagcagggtccaagggagataatccagaatcaacagatgacatgaag
agattagaagagaaagctaaacaattggcagaggaatcattacgagatcaacccaaacca
gataaaaatattctatttgtcaggagtaatactacagatgaagagttaggagagatgaca
aaaacaactaatcctgatgagatcaacattgattctgatttctccagtgatgaggatgaa
aacgtagaagaagtgcaagtgcaacatgtaccaacagaagtttttggtggattagctcca
gaagaggatgactga
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