Mytilus californianus (California mussel): 127733016
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Entry
127733016 CDS
T08804
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
mcaf
Mytilus californianus (California mussel)
Pathway
mcaf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mcaf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127733016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mcaf03041
]
127733016
03009 Ribosome biogenesis [BR:
mcaf03009
]
127733016
Enzymes [BR:
mcaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127733016
Spliceosome [BR:
mcaf03041
]
Complex A
U2 snRNP components
U2 related factors
127733016
Complex B
127733016
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
127733016
Ribosome biogenesis [BR:
mcaf03009
]
Eukaryotic type
90S particles
Helicases
127733016
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
nSTAND3
AAA_19
Flavi_DEAD
SRP54
T2SSE
ABC_tran
AAA_25
AAA_7
TsaE
Motif
Other DBs
NCBI-GeneID:
127733016
NCBI-ProteinID:
XP_052098228
LinkDB
All DBs
Position
Unknown
AA seq
732 aa
AA seq
DB search
MSKRHRIDVGDSLPKRTREEMDKNISKDDKPSKSIFEEFNIQKPTIKMNPFTGMPYTPRY
FELFNKRTLLPVWEYKDKFHDVLEKHQCLVLVGETGSGKTTQIPQWCLEWVRARFNKKGV
ACTQPRRVAAMSVAQRVSEEMDVCLGSEVGYSIRFEDCTSSRTLLKYMTDGMLLREAMSD
PLLENYGIVMLDEAHERTLATDILMGLLKEVSKQRKDLKIIIMSATLDAGKFQHYFDNAP
LMTVPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMCEEMAGDCLLFLTGQEEIDEACKR
IQREVDNLGPEVGDMKCIPLYSTLPPNLQQRIFEPAPPNKPNGAIGRKIVVSTNIAETSL
TIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTKPGKCFRLYTEK
AYKQEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAA
LDDDGELTELGSMMAEFPLDPQLAKMVIASCDFGCSNEILSITAMLSVPQCFVRPTEAKK
AADEAKMRFAHIDGDHLTLLNVYHAFKQSQEDPQWCYDNFVNYRSLKSADNVRQQLARIM
DRFNLRRTSTDFSSRDYYINIRKALVSGFFMQVAHLERTGHYLTVKDNQVVQLHPSTCLD
HKPEWVLYNEFVLTTKNYIRTVSDVKPEWLVAIAPQYYDMDNFPQCEAKRQLERIIAKFE
SKKFQQDGAASY
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaacgacacagaatcgacgttggcgactctttgccaaaacgcacacgggaagaa
atggataagaacatttccaaagatgataaaccatcaaaaagtatatttgaggagttcaat
attcaaaaaccaacaattaagatgaatccatttacagggatgccatatacacccagatac
tttgaactattcaacaaaagaactcttctgcctgtatgggaatacaaagataaatttcat
gatgtgctagaaaaacatcagtgtttggtattggtaggagaaacaggttctggtaaaaca
actcagattccccaatggtgcttggaatgggtcagagcaagatttaataaaaagggtgta
gcttgtacccagcctaggagagtagcagctatgtctgtagcacagcgtgtgtcagaggaa
atggatgtgtgcctggggtcagaggttggatacagtatacgatttgaagactgcacatca
tcgagaactttattaaaatatatgacagatggtatgttgttaagagaagctatgtctgac
cctttacttgagaattatgggatagttatgcttgatgaggctcatgaacgtacactggct
acagatatattgatgggcttgttgaaggaagtcagtaaacaaagaaaagacttgaagatc
atcattatgagtgctacattggatgctggaaaatttcagcattactttgacaatgctcca
ttgatgacagtacctggcagaacacatcctgtggagatcttctacacaccagaaccagaa
agagattacttagaagctgccatcagaactgttatacagatacatatgtgtgaagagatg
gctggagattgtctgctctttttgacaggacaagaggaaatagatgaagcctgcaagaga
atacagagagaagtagataacctaggaccagaagttggagacatgaaatgtattccttta
tattcaactctaccaccaaatctacaacagagaatcttcgagccagcacctcctaacaag
cctaatggagccattggacgaaaaatagttgtgtcaacaaatattgcagaaacatcactg
actatagatggtgttgtttttgtcatagatccaggatttgctaaacagaaagtatataat
ccacgcatcagagtagagtcattacttgtaactgccattagcaaagccagtgcccagcag
agagctggtagagcaggacgtacaaaaccgggaaaatgttttcgtctttatacagagaag
gcctataaacaggaaatgcaagacaatacatacccagaaatcttacgatcaaatcttgga
tcggttgtcttgcagctgaaaaaacttggaattgatgatttagtccattttgatttcatg
gatcctccagccccagaaactttaatgagagctttagaattgttaaattacctagcagct
ttagatgatgatggagaactgacagaacttgggtcaatgatggcagaatttccacttgac
ccacagttagctaaaatggtcatagcaagttgtgattttggatgttccaatgaaatcctc
tccattacagcaatgttgtcagtcccacagtgctttgtgagacccactgaagctaagaaa
gcagctgatgaagccaagatgagatttgcacacatagatggagaccacctgacattgctg
aatgtgtaccatgcctttaagcagagtcaagaagatccacagtggtgttatgacaatttt
gtaaactacagatcattgaagagtgcagataatgtgagacaacagttggccagaattatg
gacaggtttaatttgagacgaacaagtacagacttttccagccgggattactacatcaac
atcagaaaggctttggtgtctggatttttcatgcaggttgcacatttagaaaggacagga
cattatcttacggtaaaagacaaccaagttgtccagcttcatccttcaacatgtctcgat
cacaaaccagaatgggtgctttacaatgaattcgtattgactacaaagaattatatacgt
acagtatcggacgtgaaacctgaatggttagtggcaatagcacctcagtattatgacatg
gacaatttccctcaatgtgaagctaagagacaactagaaagaattatagcaaagtttgaa
tctaaaaagtttcagcaggatggagctgcatcatattga
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