Mytilus californianus (California mussel): 127733870
Help
Entry
127733870 CDS
T08804
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
mcaf
Mytilus californianus (California mussel)
Brite
KEGG Orthology (KO) [BR:
mcaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mcaf03041
]
127733870
Enzymes [BR:
mcaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127733870
Spliceosome [BR:
mcaf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
127733870
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
HA2_C
Helicase_C
R3H
OB_NTP_bind
Ank_2
DEAD
Ank
HA2_N
nSTAND3
AAA_19
Ank_4
Ank_3
Ank_5
T2SSE
AAA_22
Myosin_head
AAA_16
NPHP3_N
SRP54
Sigma54_activat
AAA_7
TsaE
FtsK_SpoIIIE
Terminase_4
PhoH
ATPase
AAA_11
Motif
Other DBs
NCBI-GeneID:
127733870
NCBI-ProteinID:
XP_052099276
LinkDB
All DBs
Position
Unknown
AA seq
1489 aa
AA seq
DB search
MDSSKGTGPFLQRIMQRQNSSSPRPSSCSSGDSFRGPKLKQEICIGEEVKISVHLAVERF
KLNDTQKVLEFPSSLTATERAYIHRLCQGMGFHTKSSGKRSSRYLTVYKKEGSMATQSAA
SLHMVRNSRQQIHSLLQRFPLTSKERQDLLPKTERISVSEVTKELNKTTIGKLNNGVAQI
PPERGNSDLDTFRETLPVYRFKAEIMEAINSNQAILVSGETGSGKTTQVPQMILDYCHEQ
KKLCRIFCTQPRRIAALSIAERVSAERGDKIGQTVGYQIRLESKVSPKTLLTFCTNGVLL
RTLMGSTESMSEVTHIILDEIHERDRFSDFLLIAVRDLLEKYPGLKVVLMSAALNIELFV
KYMNGCPVVSVPGSLFEVKEYYLEDVLKWTGYTNKVMNKLKKEKDQVEKQNEELKQWCSQ
ISADEGELDDDNDDNVIHSNTDNITELGEEKENLEPGVIKELDQLLSEAWLTGKEEVFSQ
IFHLILSENVSVDYQHSNTTITPLMIAAGRGFTSVVEQLLNLGANINVKASNDWTALYLA
QKFKHEDICELLEANMDVPVMGPGGDNNLDSKVMSPEDQDLLSRYHHSFDDELVDADLIL
ALLIKILCTSQTGAVLIFLPGYDDIVKIRDLIYEDRFFENYKYVMYVLHSAMQSTDQKKV
FNSPPAGVRKIILATNIAETSITINDVVFVIDSGKVKEKTFDALLNVSMLKSNWISKASS
IQRRGRAGRCRPGSCYHLMSTVRFNSLIDYPAPEILRYPLQELCLHTKLLAPANISIADF
LGKAPEPPPFLVTRNAVHILKQMDALDSFEDLTELGHHLADMPVEPRLGKMVLYAVVLKC
LDPILTIVCSLAYKDPFMLPAQPSQKRAATMSRHKFSASTYSDHMSLLRAFQAWQKAKTD
GWDRGFCHKNYLSSAVMEMIVGMRAQLLGQLRASGFVRARGGGDIRDLNTNSENWAVVKA
ALCAGMYPNIIRVDRQKSQLLSYKEGKVKFHMSSVLNTLPTAACLSRTATHKNVVRNLPS
DYLMYDEMSRYERLAFVRCSTLVSSATVALFAGPSKLSPDAIKDADTEYRRYDDYVDAAS
DSEEEVDGEVSKTSLHLDDWLRFKIDPETATCIMQLRTKWHSLFLRRMRNPSKPWSQVDE
AVIRAVINVLTNEEQALGLQQPAGIGQRPRPMTSESLMSGSYSGNENEDYGNGRNVRKGL
STPPAKQIQLLSRTPKGDRESFSSNTSSSNSPRGSEASTPSGSPQPKQGQGHPCRYYVMK
CTHQKTLDTSVSNGTWFVTANSAKKINKAFQDGKTVLMIFSINASGHFQGYAKMTSLAAK
DKMSGVQNSNFNYICSIEWIKRNNLPFQLTHHLLNPLNENKRVQISRDGQEIEPSVGEAL
TKLWDRKDPLERGWRDNQSYQHYDSNEQRYQQSPFNQFQSGNPFYPPEGASGNAEMFNAA
RLYGSMSTYPTYPGYMMSPPRQNPVTILQRNQNRRYQNYGRQHGPSGDN
NT seq
4470 nt
NT seq
+upstream
nt +downstream
nt
atggattcttctaaaggcacaggaccctttttgcaaaggataatgcaaagacaaaacagc
tcatcaccaagaccatcaagttgtagtagtggtgacagttttagaggtccaaaacttaaa
caagaaatatgtataggagaagaagtcaagatttctgttcatttggcagttgaaaggttc
aagctaaatgatacacaaaaagtactggaatttccatcttcattaacagccacagaaaga
gcatacattcataggctgtgtcagggaatgggatttcatacaaaaagtagtgggaagagg
tcgagcagataccttactgtatataagaaggaagggagtatggccactcagtcagcagct
agtcttcacatggtcagaaattcaagacaacaaatacatagccttcttcagagatttcct
ctcactagtaaagaaagacaagacttgttaccaaaaactgaaagaatttctgtcagtgaa
gtaacaaaggaactgaacaagacaacaataggtaaattaaataatggtgtagctcaaata
ccaccagagcgtggcaattctgatctggataccttcagagaaactctaccagtatataga
tttaaagcagaaatcatggaggctatcaacagtaaccaggccatcttagtatctggtgaa
actggttctggtaaaactacacaggttcctcagatgattttagactattgccatgagcaa
aaaaaactatgcagaatattctgcacacaacccagaagaatagctgctcttagtattgct
gaaagagtttctgctgaaaggggagacaaaattggacaaactgtaggatatcagatcaga
ttggaaagcaaagtatcacccaagacactactgacattttgtactaatggtgtattgttg
agaactctgatgggatccacagaatctatgtcagaggttacacacattattttggatgag
atacatgaacgagacagattcagtgactttctgttgatagctgtcagagatttacttgag
aaatatcctggtcttaaagttgttttgatgagtgcagctttaaacattgaactgtttgtt
aaatatatgaatggttgtcctgttgtgtcggttccaggaagtttgtttgaagtaaaggaa
tactatttagaagatgtgttaaaatggactggttacacaaataaagtgatgaataaattg
aagaaagaaaaagatcaagttgaaaaacagaatgaagaattaaaacagtggtgttcacag
atcagtgctgatgagggagaactggatgatgataatgatgacaatgttatacacagtaac
actgacaacattacagagttaggtgaagaaaaggagaacctagaacctggagtaataaaa
gaattggaccagttgctgagtgaagcctggttaacaggaaaagaagaagtcttctcacaa
atatttcatttaattctcagtgaaaatgtcagtgttgattaccaacacagcaataccact
ataacaccactgatgatagctgctggtcggggctttacatctgttgtggaacagttgctg
aatttgggagctaatatcaatgtgaaagcttccaatgattggactgccctttatttagca
cagaagtttaagcatgaagacatatgtgaattgctagaggcaaatatggatgttccagtc
atgggtccagggggagataacaatttagattctaaagtcatgtcaccagaggaccaagat
ttactgagtagatatcatcacagttttgatgatgaattagtggatgctgatctaatactt
gctctactcataaaaatactatgtacaagtcaaacaggtgctgtattgatatttttgcct
ggctatgatgatattgtgaaaatacgagacttgatttatgaagacagattctttgaaaat
tataagtatgtgatgtatgttttacactccgcaatgcaatctacagaccagaagaaagtt
tttaattcaccaccagctggtgtaaggaaaattattttagctaccaacatagcagaaacc
agcataactatcaatgatgtagtatttgttattgattcaggaaaagtcaaagagaaaaca
tttgatgctctcttgaatgtgagtatgttgaagagtaattggatttcaaaggccagttct
atacagaggaggggaagagctggtagatgtcgtccaggatcatgttatcatctaatgagt
acggtcagatttaactctctgatagattatcctgcaccagaaatactcagatatccttta
caggagttatgtcttcacacaaagttattagctccagctaatataagtatagcagatttc
ttaggtaaagcaccagaaccaccaccatttctagtcaccaggaatgctgtacatatctta
aagcaaatggatgcattagacagttttgaagatttgacagaattaggacatcacctagcc
gacatgccagtagaacctagacttgggaagatggtactatatgctgtggtattaaagtgt
ttagaccctatacttaccattgtgtgttcactggcttataaagatccatttatgttacca
gcacagccatcacagaaaagagcagctacaatgtctagacataaattttcagcatctaca
tacagtgatcatatgtcgttgcttagagcttttcaggcatggcagaaagctaagactgat
ggatgggatagaggtttctgtcataagaattatctgtcttctgctgtcatggaaatgata
gttggcatgagggcacaactgttgggtcagctgagagcttcaggatttgttagagccaga
ggaggaggagatatccgagatctaaatactaattctgagaactgggccgttgtcaaggca
gcattgtgtgctgggatgtaccctaatatcatcagggttgataggcaaaagtcacagctt
ctatcatataaagaagggaaggtgaagttccacatgtcgtcagtattaaacactttacca
accgcagcctgtctcagtagaactgccacacataagaatgttgtcagaaatctgccatca
gactatttaatgtatgatgagatgtctcgctatgaaagacttgcatttgtcagatgttct
acactggtgtcttcagctactgtagccctgtttgctggtccaagtaaactctcccctgat
gcaatcaaggatgctgatacagagtatagacgatatgatgactatgttgatgctgccagc
gacagtgaagaagaagtagacggagaagtatcaaagacatcgttacatctcgatgattgg
cttagatttaaaattgatccggagacagcaacctgtattatgcaattaaggactaaatgg
cacagccttttcttgaggaggatgaggaatccatcaaaaccttggtctcaagttgatgag
gctgtaataagagcagtgattaatgttctaaccaatgaagaacaagctttaggattacaa
cagcctgctgggataggacaaagaccaagacctatgacctcagaatctttgatgtcgggt
agctactctggtaatgagaatgaagattacggcaatggcaggaatgtgagaaagggtcta
tcaacacccccagccaaacagattcagcttctgtcaaggacaccaaaaggagatagagag
tctttcagtagtaatacatcttcctcaaacagtccaagaggaagtgaagccagtactcca
tcaggtagtcctcagccaaaacaaggtcaaggtcatccatgtaggtattatgtgatgaaa
tgtacacatcagaagacattagacacatcagtcagtaatggaacatggtttgtcacagct
aatagtgccaagaaaatcaataaagctttccaggatgggaaaactgtgttgatgatattt
tctatcaatgccagtggacatttccagggatatgccaagatgacttctttagctgcaaaa
gataaaatgtcaggtgtacagaattcaaacttcaattatatatgctctatagaatggata
aagagaaataatcttccatttcaattgactcatcatctcctgaatccactgaacgagaac
aagagagttcagattagtagagatggacaggagatagaaccatctgtgggtgaagcccta
actaaattatgggatagaaaggatccattggagaggggttggagagacaatcagtcatat
caacactatgactcgaatgaacaaagatatcaacagtcaccatttaatcaatttcaaagt
ggaaatccattttatcctccagagggcgcttctgggaatgctgaaatgttcaatgcagct
agattgtatggaagtatgagtacctatcctacttaccctgggtatatgatgtcaccaccc
agacagaatcctgtaacaattcttcagagaaatcaaaataggagataccaaaattatggg
aggcagcatggtccaagtggagataactga
DBGET
integrated database retrieval system
