Mytilus californianus (California mussel): 127734899
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Entry
127734899 CDS
T08804
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mcaf
Mytilus californianus (California mussel)
Pathway
mcaf03013
Nucleocytoplasmic transport
mcaf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mcaf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127734899
03015 mRNA surveillance pathway
127734899
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcaf03019
]
127734899
Enzymes [BR:
mcaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
127734899
5.6.2.5 RNA 5'-3' helicase
127734899
Messenger RNA biogenesis [BR:
mcaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
127734899
mRNA cycle factors
Common to processing body (P body) and stress granule
127734899
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
Viral_helicase1
SLFN-g3_helicase
NPHP3_N
Helicase_RecD
UvrD-helicase
AAA_16
nSTAND3
ATPase
SRP54
AAA_22
PhoH
TraI_hel_assoc_N
NACHT
AAA_5
Motif
Other DBs
NCBI-GeneID:
127734899
NCBI-ProteinID:
XP_052100890
LinkDB
All DBs
Position
Unknown
AA seq
1112 aa
AA seq
DB search
MSVDAYAPNSQTLTFLETEEDLLGADTQGTDFDFTDFTLPSQTQSQTQASQLDSNQSQVN
GIDGSIPNDVDAKGTIDVKVNNVAQGVGELNFEEDEEEQFCMKDLPKHACSYCGIHDPSC
VVFCNSTKKWFCNGRGNTSGSHIINHLVRAKAKEVTLHKDGPLGETILECYNCGCRNVFL
LGFIPAKADSVVVLLCRQPCATLSNLKDMNWDPNQWQPLIQDRQFLSWLVKVPSDQEQMR
SRQITAQQINKLEELWKDNPDATLEDLEKPGVDEEPQQVLLRYDDAYQYQNIFGPLVKLE
ADYDKKLKESQTQDNIVVRWDVGLNKKRIAFFHLPKANDEMKLMHGDELRLRYQGELHKP
WSGVGHVIKIPDNHSDEVAIELKSNAGVPTECTHNFVVDFVWKSTSFDRMQAGLKTFAVD
ETSVWGYIYHKLLGHEVEDVVIKCQLPKRFSAPSLAELNHSQVYAVKTVLQRPLSLIQGP
PGTGKTVTSATIVYHLAKQNQGQVLVCAPSNIAVDQLTEKIHKTGLKVVRLCAKSREAID
SPVSFLALHNQIRNMDSVPELAKLQQLKDETGELSSADEKRYRALKKQCERELLQHADVI
CATCVGCGDPRLSKMQFRSVLIDESTQATEPECMIPVVLGCRQLILVGDHCQLGPVVMCK
KAARAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSSFPSNIFYEGSLQNGVSPADRTRK
NLDIPYPQPDKPMFFYTTSGQEEISSSGTSYLNRTETANVEKIATRFLRSNIKPEQIGII
TPYEGQRAYIVQYMQYSGSLNKKLYQEIEVASVDAFQGREKDYIILSCVRSNEHQGIGFL
NDPRRLNVALTRARFGIIIVGNPKVLSKQPLWNHLLTYFKEQKCLVEGPLNNLKESMIQF
SKPRKLVNTSNPGGRFMSNIMFDAREVLIPGSVYDRSQAYREPVVRTHDQMSYIGPERAY
AGPAVNLPVPVNMFIPPAMPQNFNGQPPMHMGNKVMPGRFNNKGRGGRQKPPRYSNTQVQ
QPLSQNMSQSQASQEMGQSFSQGPLTQGQLSMSQPFQMSQPGLSGLSQPELSQDSYLADD
FKSQADGMLSQDSTYQGDRMFYASQLSQGPFN
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgacgcttacgccccgaattcccaaacgttgacattcctcgaaactgaggag
gatctccttggggccgacacgcaaggaactgattttgatttcaccgattttacgctcccg
tctcagacacaatctcaaactcaagcatcacagcttgactctaatcaaagccaggtgaat
ggtatagatggcagtatccctaatgatgtggatgctaaaggtaccattgatgtgaaagtt
aataatgttgcacagggagtaggtgagctgaactttgaggaagatgaagaggaacagttt
tgtatgaaagatctccccaaacatgcatgctcatactgtggaattcatgatccaagctgt
gtagtattttgtaacagtacaaagaaatggttctgtaatggccgtggtaacacttctgga
agccacattatcaaccatttagtcagggccaaagcaaaggaagtgacactgcataaggat
ggaccccttggagagacaatactggaatgttacaactgtggatgtaggaatgtcttcttg
ttgggttttataccagccaaggccgattctgttgtggtcttgttgtgtagacaaccttgt
gctactctgtccaatcttaaggatatgaactgggatccaaaccagtggcagcctttgata
caggaccgccagttcttgtcatggctagttaaggtgccatcagaccaagaacagatgaga
agtcgtcagattacagcccagcagatcaacaaattagaagaactatggaaagataaccct
gacgctactctagaggatctggaaaagccaggagttgatgaggagccacaacaagttcta
ctgaggtatgatgatgcataccagtaccagaatatatttggtcctttggtcaagttagaa
gctgactatgataagaagttgaaggagtcccaaacccaggacaacattgtcgtgagatgg
gatgttggtctcaataagaaaagaattgctttcttccaccttcccaaagctaatgatgag
atgaaattgatgcatggagatgaattgagactgagataccagggagaactacacaagcca
tggtctggtgtaggacatgtcattaagattccagataatcacagtgatgaagtagctata
gagctgaagagtaatgctggtgtacctacagaatgtacacataactttgttgttgacttt
gtctggaaatctacttcatttgataggatgcaggctggtttgaagacctttgctgtagat
gagacctcagtgtggggatatatctatcacaagttattgggacatgaggtagaggatgtc
gtcattaagtgtcagttaccaaagaggttcagtgcaccaagtttggcagagttaaaccac
tcacaagtttatgctgtcaagacagttctccagagaccactcagcttgattcagggacca
ccaggaacagggaagacagtcacttcagccaccatagtgtatcatctggccaaacagaac
caaggacaggtcttagtgtgtgctccatcaaacattgctgtagatcaactcactgaaaag
attcataaaactggactgaaagtagtaagattatgtgctaagagtagggaggccattgac
tctcctgtttccttcctggctctacacaaccagatcagaaacatggacagtgtaccagag
ttagccaagctacagcagctgaaggatgagacaggagaactgtcttctgctgacgagaag
agatacagagctctcaagaaacagtgtgaaagggaacttctacagcatgctgatgtgatc
tgtgctacatgtgttggttgtggagatccacgtctgtctaagatgcagttcaggtctgtg
ttgattgatgagagtacacaggctacagaacctgagtgtatgatcccagttgtccttgga
tgtagacagttaattcttgttggagaccattgtcagttaggacctgtagtaatgtgtaaa
aaggcagccagagctggtctgtcccagtcactgtttgaacgtcttgttgttctgggtata
agaccaatacgtctacaagtccaatacagaatgcacccagcactgagttccttcccttcc
aacatcttttatgagggatctctacagaatggtgtctctccagctgatcgtaccaggaag
aatttggatattccatatccccagccagacaaacctatgttcttttatacaacttctgga
caggaggagatttcaagctcgggtacttcatacctaaacaggactgaaacagcaaatgta
gaaaagatagctactagatttcttcgatcaaacatcaagccagaacagataggtattata
acaccatatgaaggacagagagcttatattgtccagtacatgcagtacagtggatctcta
aacaagaaactgtatcaggaaatagaggttgctagtgtagatgctttccaaggaagagaa
aaagattacattatactctcctgtgtaagatctaatgaacatcaaggaataggatttctt
aacgacccaagacgtcttaatgtcgctcttactagagcaagatttggaataatcatagtt
ggaaacccaaaggttctttccaagcaacctctatggaaccatttactgacctactttaaa
gagcaaaaatgtttagtagagggaccattaaacaacttgaaggagagcatgatacagttc
agcaagccaaggaaattggtcaacacctcaaacccaggaggaagatttatgagtaacatc
atgtttgatgccagagaagtcttgataccaggaagtgtgtatgatagaagtcaagcttac
agggaaccagttgtacgtacccatgaccagatgagttatattggaccagagagagcctat
gctggaccagcagttaatctgccagtaccagttaacatgtttataccaccagccatgcca
cagaacttcaatggacaaccaccaatgcatatgggtaacaaggtgatgccaggtcgtttc
aacaacaaaggtagaggtggtcgacagaaacctcctcgttacagtaacacacaagtacaa
cagcccctgagtcagaatatgagtcagagtcaagctagtcaggagatgggccagtcgttc
tctcagggtcctctgacccaaggacaattgtcgatgagtcagcctttccagatgagtcag
cctggactctcaggtctctcacaacctgaactgtcacaggatagctacttagctgatgac
ttcaagtctcaagcagatggcatgctttcccaggattctacataccagggagatcgtatg
ttctatgcttctcagctatcccagggtccatttaactag
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integrated database retrieval system
