Mytilus californianus (California mussel): 127736736
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Entry
127736736 CDS
T08804
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
mcaf
Mytilus californianus (California mussel)
Pathway
mcaf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mcaf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127736736
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mcaf03041
]
127736736
Spliceosome [BR:
mcaf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
127736736
Complex C
U5 SnRNP specific factors
127736736
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
127736736
NCBI-ProteinID:
XP_052103278
LinkDB
All DBs
Position
Unknown
AA seq
2362 aa
AA seq
DB search
MAFPYMIGPGGQPFIIQQVPLMPQPLIQQVPIQQQQQQQQPPVAQPQKLPDYMSEERLQD
KARKWQQLQSKRYSEKRKFGFIDAQKEETPASHVRKIVRDHGDMTNRKFRHDKRVYLGAL
KYMPHAVLKLLENMPMPWEQIRDVKVLYHITGAITFINEIPWVVEPIYVAQWGTMWIMMR
REKRDRRHFKRMRFPPFDDEEPPLDYADNILDVEPLEPIQMEVDIEEDKAVYGWLYDHKP
LADTKYVNGQTYRKWNLSLPMMSVLYRMANQLITDLVDENYFYLFDLKSFFTAKALNMAI
PGGPKFEPLVKDKELQDEDWNEFNDINKIIIRQPIRTEYRIAFPYLYNSMPFKVQLSWYH
TPNVVYIKTEDPDLPAFYFDPLINPISHRHTNKGGEILPEDDEEFELPEFVQPFMKDTPL
YTDNTANGIALLWAPRPFNMRSGRTRRAIDIPLVKTWYREHCPANMPVKVRVSYQKLLKY
YVLNALKSRPPKAQKKRYLFRSFKATKFFQLTQLDWVEVGLQVCRQGYNMLNLLIHRKNL
NYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLSKLVIDSHVQYRLGNVDAFQ
LADGIQYIFAHVGQLTGMYRYKYKLMRQIRMCKDIKHLIYYRFNTGAVGKGPGCGFWAAG
WRVWLFFMRGITPLLERWLGNLLSRQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDI
LDMMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPIPIENMILRYVKAKADWWTNT
AHYNRERIRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTT
VHWLESRRFSPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQSQREELGLIEQAYDN
PHEALSRIKRHLLTQRAFKEVGIEFMDLYSHLIPVYDVEPLEKITDAYLDQYLWYEADKR
RLFPPWIKPADSEPPPLLVYKWCQGINNLQDVWDTGEGECNVMMESSFEKMYEKIDLTLL
NRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVLDLLVL
GLHRASEMAGPPQMPNDFLTFQDVGTESSHPIRLYSRYVDKIHLFFRFSADDARDLIQRY
LTEHPDPNNENIVGYNNKKCWPRDSRMRLMKHDVNLGRAVFWDIKNRLPRSVTTIQWDGS
FVSVYSKDNPNLLFNMSGFECRILPKCRTTAGENKQKDGIWNLQNEVTKERTAQCFLRVD
DESMSRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCEN
KIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHF
RSGMSHDEDQLIPNLYRYIMPWESEFIDSQRVWAEYALKRQEANAQNRRLTLEDLEDSWD
RGIPRINTLFQKDRHTLAYDKGWRVRTEFKAFQVLKQNPFWWTHQRHDGKLWNLNNYRTD
MIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRR
FTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDL
CQVFDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAYKWNVSKPSLLADSKDVMD
NTTTQKYWIDIQLRWGDYDSHDVERYARAKFLDYTTDNMSIYPSPTGALVAIDLAYNLHS
AYGNWFPGAKPLIQQAMAKIMKANPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFS
NQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRL
GQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPF
QACLKVEKFGDLILEAKEPQMVLFNLYDDWLKTISSYTAFSRLILILRALHVNNDRTKIV
LKPDKTTITEQHHIWPTLSDEEWMKIEMQLKDLILADYGKKNNVNVVSLTQSEIRDIILG
MEISAPSAQRVQIAEIEKQTKEQSQLTATTTRTVNKHGDEIITSTTSNYETSTFSSKTEW
RVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFIIISDLRAQIAGFLYGVSP
PDNPQVKEIRCIVLPPQWGTHQTVHLPNILPEHECLKEMEPLGWIHTQPNELPQLSPQDI
TTHAKVMADNPSWDGEKTVVITCSFTPGSCSLTAYKLTPTGYEWGRQNTDTGNNPKGYLP
SHYERVQMLLSDRFLGFFMTPAQWSWNYNFMGVRHDANMKYELQLANPKEFYHEIHRPSH
FLNFSSMEESELIGADREDMFN
NT seq
7089 nt
NT seq
+upstream
nt +downstream
nt
atggcattcccatacatgataggtcctggtgggcagccatttataatacaacaagtcccg
ttgatgccacagccattgatacagcaagtccccatacaacaacaacaacagcagcagcag
cctccagtagcccaacctcagaagttaccggattatatgtctgaagaaagattacaggat
aaagcaagaaaatggcagcaattacagtcaaaaagatatagtgagaagagaaagtttgga
tttattgatgcacagaaagaggagacacctgcaagtcatgtacgaaaaattgttcgcgac
catggagatatgacaaacaggaagttcagacatgacaagcgagtttatctaggagctttg
aagtacatgcctcatgctgttcttaaactactagaaaacatgccaatgccatgggagcag
atcagagatgtcaaagtactgtatcacatcacaggagccattacattcattaatgaaatc
ccatgggttgtagaacccatatatgtagcacagtggggaaccatgtggatcatgatgaga
agagaaaagagagatcgacgtcacttcaagagaatgaggttccctccctttgatgatgaa
gagcctccacttgattacgctgacaacatcctagatgttgaacccctggagcccatacag
atggaagttgacattgaagaagacaaagctgtttatggatggctgtatgatcacaaacca
ttggctgacacaaaatatgttaatggtcaaacatacaggaaatggaacctctccttgccg
atgatgtcagtcctgtacagaatggctaatcagctgattacagatttagtagatgaaaac
tatttttatctgtttgatttgaagtccttcttcacagccaaagctctgaatatggcaata
ccaggaggacccaagtttgaaccacttgtcaaagacaaagaattacaggatgaagactgg
aatgagtttaatgatatcaataagataattatacgtcagccaatcagaacagagtatagg
attgccttcccatacttgtataacagtatgccttttaaggttcagttatcatggtatcac
acacctaacgtggtttacatcaagacagaagatcctgatctaccggccttctactttgat
cctctgatcaatccaatctcacacagacacacaaacaagggaggagagatattaccagag
gatgacgaggaatttgagctaccagaatttgtacagccatttatgaaggacacacctctt
tacacagataacacagctaacggtatagcactgctgtgggcccctcgtccattcaacatg
agatcaggacgcactcgcagagccatagatattccactagtcaaaacatggtacagagag
cactgtccagccaacatgccggtcaaggtcagagtgtcctatcagaagcttctaaagtat
tatgtactgaatgctctgaaaagtagaccaccaaaagctcagaagaaaagatacctcttt
agatcttttaaagcaacaaagtttttccagttgacacagttagattgggttgaggttgga
ttacaagtctgtcgtcaaggttacaacatgttgaatctgttgattcacagaaagaacttg
aattaccttcatttggattacaacttcaatttgaaaccagtcaaaacactcacaacaaag
gaaagaaaaaaatccagatttggtaatgctttccatttgtgtcgtgaaatcttgagatta
tccaagttagtgatagacagtcacgtacagtatagactgggaaatgttgatgcttttcag
ttagctgatggtatacagtacatctttgcccatgtaggacagttaacaggaatgtacaga
tataagtataagttgatgagacagatcaggatgtgtaaagatatcaaacatttgatttac
tacagatttaacacaggagctgttggtaaaggaccaggatgtgggttctgggccgctggt
tggagggtttggctgttctttatgagagggattacccctctcctggagagatggttagga
aacttgttatccagacagtttgagggacgtcactccaaaggtgttgccaagactgtcaca
aaacagagagttgagagtcactttgatctggagttgagagcagctgtaatgcatgacatt
ctggacatgatgccagaaggtattaaacagaacaaggcaagaactatcttacagcatttg
agtgaggcatggagatgctggaaagcaaacattccatggaaggttcctggtttacctatc
cctatagagaacatgatattgagatatgtcaaagctaaggctgactggtggacaaacaca
gctcattataacagggagagaattagaagaggagcaacagttgataagactgtatgtaag
aaaaatctgggtcgactgacacgtctatatctgaaggctgagcaggagagacaacacaac
tatctaaaggatggaccatacatcacagcagaggaagctgtggctatctacactacaact
gtacattggctggagtctaggagattctcaccaattcccttccctccattgtcatacaaa
cacgacactaaactgctcattcttgctttggagagactaaaagaggcttacagtgttaaa
agtcgactgaatcagtcccagagagaagaattaggacttatagaacaggcctatgacaat
cctcacgaagctctgtcacgtattaaacgtcatcttctcactcagagagcattcaaggaa
gtgggtatagagtttatggacttgtatagtcatttgattcctgtatacgatgtggaaccg
ctagagaaaatcactgatgcttatctcgatcaatatctttggtacgaggctgacaaaaga
cgtttgttcccaccgtggataaaaccagctgattctgaacctccaccattactagtatat
aaatggtgtcaaggtattaacaatctacaagatgtgtgggacactggtgaaggggagtgt
aatgttatgatggaatcatcgtttgaaaagatgtacgaaaagatagatttgactttactc
aacagattgttacgtttaattgttgatcataacatcgctgattacatgacagctaagaac
aacgttgtcattaattataaggatatgaaccataccaattcctatggtatcatcagaggt
ctacagtttgcttccttcattgtccagtattatggtctggtgttagatctgttggtactt
ggtcttcacagggccagtgagatggctggtccaccacagatgcccaatgactttttaaca
tttcaggatgttggaacagaaagcagccatccaattagattatattcaagatatgtagac
aagattcatctcttcttcagattttcagctgatgacgctagagacttgatccagagatat
cttacagaacatcctgatcctaacaatgagaacattgtggggtataacaacaagaaatgt
tggcccagagattccagaatgaggctgatgaaacacgatgtcaatctgggtcgtgctgtg
ttttgggatattaagaacaggttacccagatcagtgacaaccatccaatgggatggaagc
tttgtgtctgtttacagtaaagacaatcctaatttattatttaacatgagtggttttgaa
tgtcgtatcttgcccaaatgtcgtacaacagctggtgaaaataaacaaaaagatggtatc
tggaatctacagaatgaggtcacaaaagagagaacggctcagtgtttcctacgcgtggac
gacgagtccatgtcacgattccataacagagtcagacaaattctcatggcatcaggatct
actacttttacgaagattgtcaacaagtggaacactgcattgattggattaatgacctat
ttccgagaagctgttgtcaatacgcaagagttactggacttgctagtcaaatgtgaaaac
aaaatccaaactcgtattaaaattggacttaattccaaaatgcctagcagatttccccca
gttgtgttttacacacctaaagagttaggaggattgggaatgctgtcaatgggtcatgtt
ttgataccacagtcagatttacgatggtccaaacagactgatgtggggatcacacatttc
agatcaggaatgagtcatgacgaagatcagttgattcctaacttatacagatacataatg
ccatgggaaagtgagtttatagactcacagagagtatgggctgagtatgcattgaaaaga
caggaagctaatgcacagaacaggcgtctgacgttagaagatttagaggacagttgggat
agaggtattccgagaatcaacacacttttccagaaggacagacatacactggcctatgat
aaagggtggagagtccgaacagaatttaaagcattccaggtattgaaacagaatccattc
tggtggactcaccagcgtcacgacgggaaattgtggaacttaaacaactatagaactgac
atgatccaagcgttaggaggtgtcgagggaatccttgaacacaccctgtttaaagggaca
tactttcctacgtgggaaggtctgttctgggagaaagccagtggatttgaggagtctatg
aaatacaaaaaattgacaaatgcacagagatctgggctgaatcaaattccaaaccgacga
tttacgttgtggtggtcaccaacgataaacagagctaatgtgtacgtaggtttccaggta
caactcgacttgactggtatttttatgcacggtaaaatccctactctaaagatttcactg
atccaaatattcagggctcatttgtggcagaaaattcatgaaagtgttgtcatggatttg
tgtcaggtatttgatcaagaattggatgctttagagatagaaacagtacagaaagaaaca
atccatcccaggaagtcgtacaaaatgaacagttcatgtgctgatatactcctgtttgct
gcttataagtggaacgtctcaaaaccatcactgttagcagattctaaagatgtaatggat
aacacaactacccagaaatactggattgatatacaactaagatggggtgattacgactct
catgatgtggaacgttacgcacgtgctaagttcctcgactacaccacagacaacatgagt
atctatccttcacctacaggagctctggttgccattgacctagcctacaatttacacagt
gcctacggtaactggttcccaggtgccaaaccactgatccagcaggctatggccaagatc
atgaaggctaatccagccctgtatgtactgagggagagaatacgtaaaggtctacaattg
tactcatccgaacctacagaaccgtacctgtcatcacagaattacggagaactgttctcc
aaccagatcatttggtttgtggatgatactaatgtatacagagttactatacacaagaca
tttgaaggcaatttaacgaccaagccaattaatggagctatttttatattcaatccacga
acaggacagttgttcttaaagatcattcatacatcagtatgggctggacagaaacgtctc
ggacagttggccaaatggaagactgcagaagaagtagctgccttaattagatctcttcct
gtagaggaacaacctaaacagatcattgtcacaaggaaaggcatgttggatccattagaa
gtacatttgttagatttccctaatattgtcatcaaggggagtgaactccaacttcctttc
caagcctgtctcaaggtagaaaagtttggtgatctgattctagaagctaaagaaccacag
atggtactatttaatctgtatgatgattggctgaaaactatttcatcttatacggctttc
tcccgattaattctaattctccgagccttacacgtcaacaatgaccgcaccaagatagta
ttgaagccagacaagacgacgattactgaacaacatcacatctggcccactctgtctgac
gaggaatggatgaagattgaaatgcagcttaaagacctcattctggctgattatggaaag
aaaaacaatgtgaacgtggtttctttgacccaatcagaaataagggacattatccttggt
atggagatatcagcaccatcagctcagcgtgtacaaattgccgaaattgaaaaacagaca
aaggaacaatcacaacttacagcaacaacaacacgaactgttaacaaacatggagatgaa
attattacgtccacaaccagtaactacgagacatcaacattctcgtctaaaactgagtgg
cgtgttagggcaatctctgcaaccaacctccatctgagaactaatcatatttatgtctcc
tcagacgatatcaaagagacaggatatacttatattttaccaaagaatgttctaaagaag
tttattattatctctgatctaagagcacagattgctggatttttatatggagttagcccc
cccgataacccacaggtcaaggagatcagatgtatagtcttaccaccacagtggggaact
catcagaccgtccatctaccaaacattctccctgaacatgaatgtcttaaagagatggag
ccattgggatggattcatacacaacctaatgaattaccacagctgtctcctcaggacatt
actactcacgctaaagtcatggctgacaatccttcctgggatggagaaaagactgtcgta
attacatgcagttttacaccaggatcctgctcactgacagcctacaagttgacccctacg
ggatacgaatggggcagacagaacacggacactggtaacaatcctaaaggttatctcccc
tcacattatgaacgtgtacagatgttattgtcagatcgtttccttggattcttcatgact
cctgctcagtggtcctggaattacaactttatgggtgttcgtcatgacgctaacatgaag
tatgaattacagctggcaaaccccaaggaattctaccatgaaatacatcgaccatctcat
ttccttaacttcagttcaatggaggagtcggaattgatcggggcagatagagaagacatg
tttaattag
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integrated database retrieval system
