Mytilus californianus (California mussel): 127737334
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Entry
127737334 CDS
T08804
Name
(RefSeq) symplekin-like
KO
K06100
symplekin
Organism
mcaf
Mytilus californianus (California mussel)
Pathway
mcaf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mcaf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127737334
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcaf03021
]
127737334
03019 Messenger RNA biogenesis [BR:
mcaf03019
]
127737334
Transcription machinery [BR:
mcaf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127737334
Messenger RNA biogenesis [BR:
mcaf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
127737334
U7-dependent histone pre-mRNA processing factors
127737334
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
INTS1_R4
SCD
HEAT_EZ
Motif
Other DBs
NCBI-GeneID:
127737334
NCBI-ProteinID:
XP_052103896
LinkDB
All DBs
Position
Unknown
AA seq
1250 aa
AA seq
DB search
MSAESQSNPLSTAAQFFMDEEEGSTSTYDRVVELVNQATLMQKDVQKIGNLRQVQELIVH
KEPGLLDNFLEEMLAFQSDKGNEVRKFIVSFIEEACKKEPDLLGKCMPCLQVLLQDENVN
VQKKTILVLPNIYRTIVWWLIKSKPGNDEEKSFVWESMKAMKNKMYELIDSENDGIRTHV
VKFFEGYVLALSRKTSESEVPKGMKPEKALTLDDIPNEHKFLKLKRLEEEGAKGFDIMLR
FQASPHISSINLMTVMGSITTIAKQRPDYFSKVVQAFEALQVNLPPTLAKSQVSSVRKNL
KMHMLSLLRHPASQDYIPQITTLLTDLGATNSEVMKSMPKIDESRKRKAEEASAPAKKAK
VEIEQEEDYLTTPFVERGTTSVLKQKPADLQHTAIDITSNDLYERLTPHNVADLVLISMV
MLPETMPAHFQSTYTPIAAAGTEAQKKHMARLLATQLTTAGMGKGIREVQKQQSDTIKED
GSASPEYQPTSPKQTIQTVVGGLTAQEIEDHIISRPSMPAPTLPVKRGIKIFKLGAITQP
LDRDRLDNMTASAFKRILKAEKNAAKGNALQARTKLLASLTSQFGGELKNLLQEYIFEDL
RTHSDLAFAWLYQEYANCQGFCASSLGNERLSMASYDECLTRLLSGLMERPEHPTQGLFH
RLLLEAPAITDNALEILRRFFVDESKVVGGMNTLKDLILTRPEHRLRFLGILLESCSHEK
PEVRGVAIRVTKKLYENENLRGPIEKYAQRTLKLLLDPKPPPEMFGNLRNKEFIPDVWTE
DVIKMCLYLYLGLLPCNHKLIHELAVIYTGAIADIKRTILRTLETPVKGMGMQSPELLTL
VESCPKGAETLVTRVIHILTDKATPSPELVERVRDLYHKRVPDVRFLIPVLNGLTKSEVI
AALSKLIKLNPIVVKEVFNRLLGHGDAAYNSPLSPVELLIALHNIDPTKCDMKTIIKATN
LCFSEKNIYTQEVLAVVMKTLMEQTPIPTLFMRTVLQSLSMYPRIIGFVLNILQRLITKQ
VWKQKKVWEGFIRCCQRTKPQSFAVMLQLPAPQLKSVFDTCPELREPLLDHVNTFTAHQK
ACIPRTIMNVLEKDPEEEKRKQEEKRNIEEGQNFIMLQPHQIKLEKTDNFEAASQIMPPP
KDVTEIRTVQVLSDRNMDGDRQRQEAEKQRSSEEIQQDDDRRKREDDRRKEDERRKRDEK
RSTDPRRVKSDRDVMMRDVSPENTLAIAEEPMDTTDSLSRRESRRDRPRH
NT seq
3753 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcagaaagtcagtcaaaccctttgtcgactgctgcacagttctttatggacgaa
gaagagggcagcacgtccacttacgatagggttgttgaactggtcaaccaggctactttg
atgcagaaagatgttcaaaagattgggaatttaagacaggtacaagaattaattgtacat
aaagaaccaggattattggataactttcttgaggaaatgctagcattccagagtgataaa
ggaaatgaagtcaggaagtttattgtcagctttattgaagaagcatgtaaaaaggaacca
gatttattagggaaatgtatgccgtgtctacaagtgttactgcaggatgagaatgtgaat
gttcagaagaagaccatcctggtactacctaacatttataggactattgtatggtggctc
atcaaatctaagccagggaatgatgaagagaagtcctttgtatgggagtctatgaaggca
atgaaaaataagatgtatgaactaatagattcagaaaatgatggaataagaacacatgtt
gtgaagttctttgaaggttatgttttagctttatcaaggaaaacatctgaatctgaagta
cctaaaggtatgaagcctgagaaagccctcactttagatgatatacctaatgagcataag
tttctgaagttaaaacgtttagaagaggaaggagctaaaggatttgatatcatgttgagg
ttccaggcttctcctcatatctctagtataaatttaatgactgtaatgggaagtattaca
acgattgccaaacaacgacctgattattttagtaaagtagtacaagcttttgaagcatta
caagtaaatttacctcccacacttgccaaatctcaagttagtagtgtgagaaagaattta
aagatgcatatgttgtctttattaagacatccagcttctcaggactatattccacagata
acaacattgctgactgatctaggtgcaacaaactctgaggtgatgaaaagtatgccaaag
atagatgaaagtagaaaaaggaaagctgaagaggcatcagcacctgctaaaaaagctaaa
gtagagattgagcaagaagaggattacttgacaactccatttgtagagaggggtaccacc
tctgttcttaaacagaaaccagcagatttacaacatacagctattgatattacctccaat
gatttatatgagagattgacaccacacaatgttgctgatttggttctgattagtatggtt
atgttaccagaaacaatgccggcacatttccagtctacgtatacacctatagcagctgca
ggaacagaggcacagaagaaacatatggctaggctattagccacacagctgactactgca
ggcatgggaaaaggaattcgggaagtacagaaacagcaatcggataccattaaagaggat
ggtagtgcctcaccagaatatcaaccaacatcaccaaaacagactatacagacagttgtt
ggtggtttaacagcacaggagatagaagatcatattatatctagaccatccatgccagct
cctacgcttcctgtgaaaagaggaataaagatattcaaacttggagccattacacagcca
ctagatagagatcggttagataacatgactgctagtgcctttaaaagaatacttaaagct
gagaaaaatgctgccaaaggaaatgctttacaagctaggactaaactgttggctagtttg
acatctcaatttggtggagaactcaaaaacttacttcaggaatatatatttgaagactta
aggacacattcagacctagcgtttgcctggttataccaagaatatgctaattgtcaggga
ttttgcgccagtagtctaggcaatgagagattatctatggcaagctatgatgaatgtttg
accagattgttgtctgggttaatggaaagaccagaacatcctactcaaggattgttccac
aggttactactagaggctccagcaattacagacaatgctttagagatactgaggaggttc
tttgttgatgagtcaaaggttgttggaggtatgaacactttaaaggatctgattctaact
cgaccagaacacagactgagatttttaggcatattgttagaatcatgttcacatgaaaag
cctgaggtcagaggtgttgccattagagtcacaaagaaattatatgaaaatgagaatctt
cgaggtcctattgagaaatatgctcagagaacactgaaattattgttagatccaaaacca
cctccagaaatgttcggtaatttgagaaacaaagaatttataccagatgtttggacagaa
gatgtcattaaaatgtgtttatacttgtatctagggcttctgccgtgtaaccacaaactc
attcacgaattagcagtaatttatacaggtgccattgcagatataaaacgtactatactg
agaacattggaaacaccagtaaaaggtatgggaatgcagtctccagagttactgaccttg
gtagagagctgtcctaaaggagcagaaacactggttaccagggttatacatatactaaca
gataaagcaacaccatcaccagaactggttgaaagagtaagagatctatatcacaagagg
gtaccagatgtccgcttcctaattcctgtattgaatggattaacaaagagtgaagtaatt
gctgcactgtccaagctgattaaactgaatcccattgttgttaaagaagtgttcaacaga
ttacttggacatggagatgctgcttacaattccccattgtcacctgtggagctgttaatt
gccttacataatattgatcctacaaaatgtgacatgaaaactatcatcaaagctactaac
ctatgttttagtgagaagaatatttacacacaggaagtattggctgttgtcatgaagacc
ttgatggaacagactcccattcctactttgttcatgaggactgttttacagtcattgtca
atgtaccctagaataataggctttgtcctgaatatcttacagagactaatcactaaacag
gtatggaaacaaaaaaaagtatgggaaggatttatacgatgttgtcagcgcaccaaacct
cagtcttttgctgtcatgttacaactaccagctccacagttaaaaagtgtgtttgatact
tgtccagaactgagggagccattgttagatcatgtcaatacctttacagcacaccagaaa
gcttgtattcctagaaccatcatgaatgtccttgagaaagaccctgaagaagagaagagg
aaacaggaggaaaagagaaatattgaggaaggacagaactttattatgttacaacctcat
cagatcaaactagaaaaaacagacaactttgaagcagcatcacaaattatgcctccacca
aaagatgttacggaaatcagaacagtacaggtgctgagtgaccgtaacatggatggtgat
cgtcaaagacaggaggcagagaaacaacggtcgtcagaagaaattcaacaggatgatgat
cgaagaaagagagaggatgataggcgtaaagaagatgaacgaagaaaaagagatgaaaag
agatcaacagatccaaggagagtaaagtctgacagagatgtaatgatgagagatgtatct
ccagagaatacattagctattgctgaggaaccaatggatactactgattctttatcaaga
agagaatctaggagagatagacccagacattga
DBGET
integrated database retrieval system
