Mytilus californianus (California mussel): 127738308
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Entry
127738308 CDS
T08804
Name
(RefSeq) vam6/Vps39-like protein
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
mcaf
Mytilus californianus (California mussel)
Pathway
mcaf04140
Autophagy - animal
mcaf04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
mcaf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
127738308
04148 Efferocytosis
127738308
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mcaf04131
]
127738308
Membrane trafficking [BR:
mcaf04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
127738308
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
TPR_Vps41
DUF3829_2nd
DUF4756
Motif
Other DBs
NCBI-GeneID:
127738308
NCBI-ProteinID:
XP_052105469
LinkDB
All DBs
Position
Unknown
AA seq
883 aa
AA seq
DB search
MHDAYEAISLLEKLPLKIESITCHDDILLVGTKESHLLQYRIRRKSGAAGESKFDVQLER
SNKNFAKKPITQLSAVPQLHILISLSDNIVSVHDLMTFNLITCINKTRGANLFALDVQTQ
KSLSGEENHVLRMCVSVKRKLQVSFWKNRNFQDLTEMNLYDIPRCMCWCKESICVGFRRD
YFLVKINSGDIKELFPLGNTQHEPVITKVANDRLMLGRDNMSILIDSEGQPTQKNPINWS
GIPTQIENNPPYIIGILPKFIEVRTIETKLLIQQKELQHAKFICQGSGSIYVASINFIWR
ICPMPISYQIRQLLENHEFELALRLAEMTEDQDEEKQKRIHSIKNLYAFDLFCQHRFEES
MHIFVKLGTDPSHVIGLYPNLLPQEFRKQLEYPKKLPDLEGGELEKALSALQDYLTQKRN
ELLSDISKESNKELSTIAIKEGNTTIKSKKQLSQIIDTTLLKCYIQTNDALVAPLLRLKD
NCCHVDECEKILKKKEKFSELIILYEKKGLHEKALHLLMKQAARPNSPLKGHDRTVQYLQ
HLGADHLKLIFEYAEWVLKEHPEDGLKIFTEDLPEVETLPRFKVLEYLEKISKDLAIAYL
EHIITECGDVTPEFHNMLAQSLREKVQVLMTEYLQSLPEGHLPSKAGQEPDKLGEYRRKL
IEFLECSQYYMPERLLTRFPIDGFYEERAILLGRLDRHEQALGIYVHILRDDTLAKRYCL
NYFDRGREGNKDVYYYLLKMYLQPPPSSSLGMSASQGIKPQQNMTAAFRLLQEHATKIDV
SKTLELLPTSTPVAEILRYLEKVMEHQATIKRDCQVLKSMLYAENLQVHEQRMFYQKAKV
VVNDEKICKVCKKRLGNSAFVRYPNGVIVHYYCCKDPNKCPED
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgcatacgaggcaatatcacttcttgaaaaactaccattaaagatcgaatcc
ataacgtgccatgatgacattttacttgttggtacaaaggagagccacttgttacagtat
agaatcagaagaaaatctggagcagctggtgaatcaaaatttgatgtacaattggaaaga
tcaaataaaaattttgccaaaaagccaataacacagctgtctgctgttccacaactccat
attctaattagtctgtcagataatatagtcagtgtccatgatctgatgacctttaacctc
atcacatgtatcaacaaaaccagaggagcaaacttgtttgctttggatgtgcagactcaa
aagagtttaagtggagaagaaaatcatgtgttgagaatgtgtgtctctgtcaaaagaaaa
ctgcaagtgagcttctggaaaaacaggaattttcaagatctgactgagatgaacttatat
gatatacctagatgtatgtgttggtgtaaagaatctatatgtgttggatttagaagagat
tattttctagttaaaataaactcaggcgatatcaaggagttatttccccttggcaacact
caacatgaacctgtgataactaaagtagcaaatgatagattaatgttaggacgtgataac
atgtcaatactaatagactctgaaggccagccgacacagaaaaatcctattaactggagt
ggaattccaacacaaatagaaaacaatcctccatatataattggcattcttccaaagttt
attgaagttagaactatagagactaaattgttaatacaacagaaggaactgcaacatgca
aaatttatatgccaagggagtggtagcatttatgtagcttctataaattttatatggagg
atttgtccaatgccaatatcttatcagataagacagttgttagaaaaccatgaatttgaa
ctggctttacgtttagctgaaatgacagaagatcaggatgaagaaaaacagaagagaata
catagtataaagaatttgtatgcctttgatttgttttgtcaacatagatttgaagaatca
atgcacatatttgttaaacttggcacagatccgtcacatgttattggactgtatcccaac
ttgttacctcaggaattcaggaaacagttagaatatcctaaaaaacttccagatttagaa
ggaggggagttagaaaaagctttatcagcactgcaggattacctcactcaaaaaaggaat
gaactacttagtgacatttcaaaagaatcaaacaaagaactgagtactattgctataaaa
gaaggcaacactacaatcaaatctaagaaacaactgagtcaaatcattgatacaacttta
ctgaaatgctacattcagacaaatgatgctttggtggcacctttgttaagattgaaagac
aattgctgccacgtggatgagtgtgaaaaaatactcaagaaaaaagaaaaattcagtgaa
cttatcattctctatgaaaagaaaggacttcacgaaaaggctttacatttattgatgaaa
caagctgccagacctaactctcctctcaaaggccatgacaggacagtgcaatatttacag
catttaggtgctgatcacttaaaattaatatttgaatatgctgaatgggtattgaaagaa
catccagaagatggcttaaagatatttactgaagatttaccagaagtggaaaccttgcca
agatttaaagttttggagtatctagaaaagatttcaaaagaccttgccattgcttacttg
gaacacataattacggaatgtggagatgtgacacctgaatttcataatatgttggctcag
tcactcagagagaaagtacaagtattgatgacagaatatttacagtcactgccagaagga
catctaccatccaaagcaggtcaagaacctgacaagctaggggaatatagaagaaagtta
atagaattcttagagtgttctcaatattatatgccagaaagacttcttactaggtttcct
atagatggtttttatgaagaaagagctatattactgggtagattagacagacatgaacaa
gcattaggaatttatgttcatattttaagagatgatactctagccaaaaggtactgtttg
aattattttgacagagggcgcgaaggaaataaagatgtgtattattatttattaaaaatg
tatcttcaacctcctccatcatcatcattaggaatgtcagctagtcagggcattaagcct
caacaaaatatgacagcagccttcagactgttacaggaacatgccacaaaaattgatgtc
tctaaaactttagaacttttacccacaagtactcctgttgctgaaattttgagatattta
gaaaaagtaatggaacaccaagcaacaataaagagagattgccaagtgttaaaaagtatg
ttatatgctgaaaatctccaggttcatgaacagagaatgttttaccaaaaagctaaagta
gttgtaaatgatgaaaaaatatgtaaagtttgcaagaagagactcggaaacagtgcattt
gtgagatatcccaatggtgtgattgttcactattattgctgtaaagatcctaataaatgt
ccagaagattga
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