Methylacidiphilum caldifontis: IT6_02065
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Entry
IT6_02065 CDS
T09436
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
mcao
Methylacidiphilum caldifontis
Pathway
mcao03030
DNA replication
mcao03430
Mismatch repair
mcao03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mcao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IT6_02065 (dnaE)
03430 Mismatch repair
IT6_02065 (dnaE)
03440 Homologous recombination
IT6_02065 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mcao03032
]
IT6_02065 (dnaE)
03400 DNA repair and recombination proteins [BR:
mcao03400
]
IT6_02065 (dnaE)
Enzymes [BR:
mcao01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
IT6_02065 (dnaE)
DNA replication proteins [BR:
mcao03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
IT6_02065 (dnaE)
DNA repair and recombination proteins [BR:
mcao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
IT6_02065 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
CDC24_OB3
DUF447_C
Motif
Other DBs
NCBI-ProteinID:
QSR89097
LinkDB
All DBs
Position
421540..425013
Genome browser
AA seq
1157 aa
AA seq
DB search
MSSNFVHLHLHSDYSLLDASARIKDIVGKAKELGMAAVALTDHGNLYGTIEFYKACVSQN
IKPIIGCEAYITPGSRFDRKGNRTPIYHMTLLAKNNQGYKNLLRLISLAHLEGFYYKPRI
DIDLLKEYGRGLIGTSGCMNGAIPQKILEGDLKTARKIAEELSQIFEPDCFYLEIQNHGL
KEEKEIREVLADFAQSMGLPLVATNDVHYIEQEDAQFHDVLLCIGTASQIHDTKRKKYPC
SEFFFKTPQQMAELFKEYPQAVENTLNIANSCDVTIELGKNHYPTYNPPPPYKSQEEYLR
KLCYEGLQKRYAPNINEKIKERLEYELSVIEKTGFSSYFLIVWDFIHYAKKEGIPVGPGR
GSAAGSLTAYVLEITDIDPLKYGLVFERFLNPQRVSPPDIDIDFCYNRRSEVIDYVRKKY
GEYSVAQIITFGTLGAKMAVRDVGRVLGLSYQEADRIAKMIPADPQVTLEKSRELNPLLD
ELWTNDPQSREVLNIATKLEGLTRQAGVHAAGVVISEGELLNFIPLTRGEQGEIVTQWSM
EPIAEIGLLKMDFLGLKTLTVISECLDLIKEKKNIQLDPRQFPLDDKKTYELLGRGHTIG
VFQLESAGMVDLAKKLKPGNIEDIIALVALYRPGPMENIPAYADRKLGKVPITYDHPLLE
PILKDTYGVMIYQEQVMQAANVLAGYSLGDSDLLRRAMGKKKPEEMRKQRDQFIKGCKEK
NGIPEDKAIQIFETLEKFAGYGFNKAHSACYGYLAYITAYLKANYPVFYLCTLLSNESGD
AEKIELLVSECRRMGIAVLPPDISKSDVRFSVENGSIRWGLSAIKNVGEAAAKAIVELRE
KKGSYQSLFDLCFGIGGRIINKKILESLIKSGACDSLGRSRKELLEKLPSILSAGSRSSK
ERSTGQQNLFEEQSFIYSTDQQPVENFEDYPLHIRLQWEKEFLGTYLSSQPLDEWIPWIN
LFQNVPICALKEQADSSRIYLPGMITHIEKKTAQKSKKPYFKLILEDQTGQIEVILFKDD
LPPSLLDQWTTTAFVVDGHLSSRDNDVSIRAEHIYTIEQALQSLTASLLLTIKEEKWEAD
SWQKLHKLFLEHPGNIPAQFRCIKKDGTVYTIEVTKEFYVNLSITFLKRLLSVLTLDSIS
LQLKKPQYNSFSRNKIQ
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaattttgttcatcttcacctccattccgattacagccttctggatgcatca
gcaaggattaaagacattgtcggcaaagccaaagagctggggatggctgctgttgctctg
accgatcatggcaatctctatggaactattgaattctacaaggcctgtgtcagtcaaaat
atcaagcccatcattggatgtgaagcttacattactcccgggagccgctttgatagaaaa
gggaacaggacccctatttatcacatgaccttactggctaaaaacaaccaaggctacaaa
aatcttttgagacttatatctctagcccacctagagggattttactataagccaaggatt
gacattgatcttcttaaagaatatgggaggggtcttattggcaccagtgggtgtatgaat
ggagcgattccacaaaaaatacttgaaggagacttgaaaaccgcaaggaagatcgctgaa
gaactcagtcagatctttgaaccggactgtttttatcttgaaattcaaaatcatggtcta
aaagaagaaaaagaaatcagagaggtgcttgctgattttgcccaaagcatggggttaccc
ttagtggcgaccaacgatgtccattatatagaacaagaggacgcccagtttcatgatgtt
ttactttgcatagggactgccagtcaaattcatgacactaaaagaaagaaatatccttgt
tcagagtttttctttaagacccctcaacagatggctgaactgttcaaggaatatccccag
gcagtagaaaataccttgaacattgcgaatagctgcgatgtcaccattgaactcggcaaa
aaccattatcctacttacaacccacctcccccctataaatctcaagaagaatatttaaga
aagctgtgttacgaaggacttcaaaaaagatacgctcccaacatcaatgaaaaaatcaaa
gaaagactggaatatgaactttccgtgattgaaaagaccggtttttcaagttatttcctt
atcgtttgggatttcatccattatgccaaaaaagaaggtattcccgtcggtccgggaaga
ggcagcgctgcaggcagtcttacggcctacgttttagaaataaccgatatcgatccactc
aagtacggcttggtctttgaaagatttttaaatcctcaaagggtttctccaccagatatc
gacatcgacttttgttataaccgccggtccgaggtcatcgattatgtaaggaaaaaatat
ggagaatattctgtagctcaaattataactttcggtactcttggagcaaagatggcggtc
agagatgtcggccgagtcctggggttgagttaccaagaggcggaccgaatagccaagatg
attcctgctgatcctcaagtgactttagaaaaatccagagaactcaatcctcttttagac
gaactttggaccaacgatccccaaagcagggaagtccttaatatcgcaacaaaactcgaa
gggctaacaagacaagctggagttcatgctgccggggtggtgatttcagaaggtgaactt
cttaacttcattcccctaacccggggtgaacagggtgaaattgtaactcaatggtcgatg
gaacctatcgctgaaattggactgttgaaaatggatttcttggggctaaaaacccttaca
gtcatttctgaatgcttggatcttataaaagaaaaaaagaatatccagttagatccaagg
cagtttcctctggatgataaaaaaacttacgagcttttaggccgaggacacaccatcggc
gtgttccaactggaatctgcaggaatggttgatcttgccaaaaagcttaagcccggaaat
atcgaagatatcatcgccctggttgccctttatagaccaggaccaatggaaaacattcct
gcctatgctgacagaaaactaggcaaagttcccattacctatgaccacccacttttagaa
cctattctcaaagatacttatggggtaatgatctatcaagagcaggttatgcaagccgca
aacgttcttgctggctattcgctgggagattctgatctgctgagaagggcaatggggaaa
aaaaagccggaggaaatgcgaaagcaaagagaccaatttattaagggttgcaaggaaaaa
aatggtattccagaagataaagcgatccagatttttgaaaccttagaaaagtttgcgggc
tacggttttaataaagctcacagtgcttgttatggttatcttgcttatataaccgcctat
ttaaaagctaactaccccgttttttacctttgtactcttttatccaatgaatcgggggat
gctgaaaaaatagagttgcttgtatccgaatgcagaagaatgggtattgccgtattacct
cccgacatatcaaaaagcgatgttcggttttcagtcgaaaatgggtctatccggtgggga
ctctctgcaatcaaaaacgtcggagaagctgcagcaaaagcaattgtcgagttaagggaa
aaaaagggaagctatcaatctttgttcgatttatgcttcggtattggaggaagaattata
aacaagaaaatcctggagagtttaattaaatcgggggcctgcgacagccttgggagaagc
cgaaaagaattattagagaaattgccttcaatcttatcggcaggaagcagatcttctaaa
gaaagatcaactggccaacaaaacctttttgaggagcagagttttatttattctaccgac
cagcaacccgtcgagaattttgaagattaccctctccacattcgtctccagtgggaaaaa
gaatttctaggtacctatttgagcagtcagcctttggacgaatggatcccatggataaat
cttttccagaatgtccctatctgcgccttaaaagaacaagctgacagcagtcggatctat
cttcccggaatgattacccatatagagaaaaaaacagcccagaaatccaaaaaaccttat
tttaaattgatacttgaagatcaaacgggtcagattgaagtcatccttttcaaggatgac
cttcctccttctctactcgatcaatggacaaccacagcattcgtggtagatggacatcta
agctctagagataacgatgtatcgattcgggcagagcacatttatacgattgagcaagcc
ttgcaatccttgaccgcttcgctccttttaactataaaagaagaaaagtgggaagctgat
tcttggcagaaactgcataagctttttttggaacaccctggtaatattcccgctcagttt
cgttgtataaaaaaggatggaaccgtttataccatcgaagtgacaaaagaattctacgtc
aatctttccatcacttttttaaaaagacttctttctgtcttgaccctggactccattagc
ttgcagttaaaaaagccgcaatataactccttttctagaaataaaattcaatag
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