Methylacidiphilum caldifontis: IT6_03475
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Entry
IT6_03475 CDS
T09436
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
mcao
Methylacidiphilum caldifontis
Pathway
mcao02020
Two-component system
mcao02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mcao00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
IT6_03475 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
IT6_03475 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcao03021
]
IT6_03475 (rpoN)
Transcription machinery [BR:
mcao03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IT6_03475 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_11
HTH_23
MarR
HTH_38
LacI
Pox_polyA_pol
HTH_3
HTH_Tnp_ISL3
HTH_Crp_2
Motif
Other DBs
NCBI-ProteinID:
QSR89352
LinkDB
All DBs
Position
complement(737234..738610)
Genome browser
AA seq
458 aa
AA seq
DB search
MSTSLGLYQSIKLHQALSPQMQHSLTILQAPAVELSAIIQQELLSNPLLEMSEDKPLGGQ
SIEGLLQEKEKWYDYLGPNFEGSQRSTEDEKKRQFFFDSQVVPESMVTELSKQLSLVCTD
NTLLEAAHYIIGNLDDRGYLNTELENIAHELGLPYGLVEKALELVQSLDPPGIAARNLSE
CLLLQLKALGKENSLEFRIVSEYLTLLEKKKLSEIAKQLKVNLKQVQEAVESIRSLNPFP
GSKYRGDEKEKIIQVDLIVVKEAGSWKVYFNEEVIPRLRINHYYESLLSQQDKDPYLKNY
LKEKKRSGLFLIKCLKMRESTLLRVAEAIIQSQEDFFNFGPHSLKPLTMSEIAKKIDVHE
TTVSRAIANKYIKTPHGIFELKYFFNSGFQKETGEFVANQIVKEAIERLIRNEDPKSPLS
DQQIVALLAKEGIKMARRTIAKYRAHLKILPSHLRRTS
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
gtgtcaacatcgttaggactttatcaatcgattaagttgcatcaggcgttgtcgcctcaa
atgcaacattctttaactattttgcaagctcctgctgttgagctgtctgcaattatccag
caggagttgttatccaatccccttttagaaatgtctgaagacaagcctttgggaggacaa
tctatcgaagggttactccaggaaaaagaaaaatggtatgactatttgggaccgaatttt
gagggatctcaaagatcgactgaagatgaaaaaaagaggcagttttttttcgattcccag
gttgtccctgaatccatggttacggaactttctaagcaactttctttggtttgcaccgac
aacacccttttggaagccgctcattacatcattggtaatttagatgacaggggatattta
aacactgagttggaaaacatcgctcatgaactgggtttgccttatggtttggtggaaaaa
gctttggagcttgttcaatctcttgatcccccaggtatagctgcgagaaacctttctgaa
tgccttttgttacagctcaaagccttgggaaaggaaaactctttagagtttcgtattgtt
agcgagtatttaactctgctagaaaagaaaaaattatctgaaatagcaaaacaattaaaa
gtaaaccttaaacaagtccaggaagcggttgagtccattcgttcccttaatccctttcca
ggttcgaagtatcggggtgatgagaaagaaaagataatccaggtagatcttattgttgtt
aaagaagcgggaagctggaaagtttacttcaacgaagaggtaatacctaggttgcgtatt
aatcactattatgagagtctgctcagtcaacaggataaagatccctatttaaaaaattat
ttgaaagaaaaaaaacgttcggggcttttcttgattaagtgtttgaagatgagggaaagt
actcttttaagggttgccgaagcgattatccaaagccaggaggatttttttaatttcggc
cctcattccttgaaacccttgacaatgagcgaaatagccaaaaagatcgatgtgcatgaa
acgacggtcagccgtgccatcgctaataaatatataaaaacccctcacggtatattcgaa
cttaagtattttttcaattcaggttttcaaaaggagactggggagtttgtggccaatcag
atcgttaaagaagccatagaaaggctcatccgcaacgaagacccaaaatctcctttatcc
gatcagcaaatagttgctcttctagctaaagagggaataaaaatggctcgacgaaccatt
gctaagtatagggctcatttaaaaatcttaccgagccatttacgtcggacaagctaa
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