Methylacidiphilum caldifontis: IT6_04005
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Entry
IT6_04005 CDS
T09436
Symbol
ruvB
Name
(GenBank) Holliday junction branch migration DNA helicase RuvB
KO
K03551
holliday junction DNA helicase RuvB [EC:
5.6.2.4
]
Organism
mcao
Methylacidiphilum caldifontis
Pathway
mcao03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mcao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
IT6_04005 (ruvB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcao03400
]
IT6_04005 (ruvB)
Enzymes [BR:
mcao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IT6_04005 (ruvB)
DNA repair and recombination proteins [BR:
mcao03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
IT6_04005 (ruvB)
RecFOR pathway proteins
IT6_04005 (ruvB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RuvB_N
AAA_lid_4
RuvB_C
AAA
AAA_5
Rad17
TIP49
Mg_chelatase
AAA_18
AAA_16
nSTAND3
DUF815
AAA_14
AAA_3
ResIII
RNA_helicase
AAA_17
Sigma54_activ_2
AAA_33
AAA_24
NPHP3_N
NTPase_1
AAA_28
TsaE
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
QSR89452
LinkDB
All DBs
Position
complement(852240..853256)
Genome browser
AA seq
338 aa
AA seq
DB search
MNPKIKDVLAEPTDKLFEESLRPQKLDEFLGQEKIKDRLYILVQAARIKNEPLPHLLFSG
PPGLGKTTLAHILSKEMNASLKITSGPALDKAANLAGILTSLESFDILFIDEIHRLSRPV
EEYLYPAMEDYRMDILIDQGPNARSIRLNLPKFTLVGATTRVGLLTEPLRSRFGLINRLE
YYKLEDLIRIVERSARILEIDVNEQAAREVAKRSRGTPRTVNHLLRWIRDYAYAKGYQRV
SLDVVNKALAMIEIDEDGLDEMDKKILETIVYKFEGGPVGLQSLSVAIGEDPATLEEVHE
PYLILEGYLKRTPQGRVVTARAYEKLKVSLPPSQEELF
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atgaatcctaagattaaagatgtactcgctgaaccgacagataaactctttgaagaaagt
ttaagacctcaaaaactcgatgaatttttagggcaggaaaaaattaaggatcgactctat
atccttgttcaggcagcaaggattaagaatgaaccacttcctcatctccttttcagtgga
cctccaggtcttgggaaaacgactttagcccatatcctctccaaggaaatgaatgcttca
cttaagattacttctggtccagcgcttgacaaggcggctaatttagccgggatcttaact
tcattggagtcatttgacattcttttcattgatgagatccatcggctcagtagacctgta
gaagaatatctttatccggcgatggaagattaccggatggatattttaatcgatcaaggc
cccaatgcccgaagcattaggcttaaccttccaaagtttactctagtgggtgcgacaacg
agggtaggattacttactgaacccttaagaagccgatttggactcattaatcggctagaa
tattacaaactagaagatcttatacgtattgtcgagcgttcagctcgcattttagagatc
gatgtgaatgagcaggcggccagagaggtggccaaacgttctcggggcacgcccaggacg
gtcaaccatcttttgcggtggataagagactatgcttatgcaaagggctatcaaagggtc
tctttggatgtagttaacaaggctttagcgatgatcgaaattgacgaggatggattagac
gaaatggacaaaaaaatattggaaaccatcgtttataagtttgaaggtggccctgtggga
ctgcaatccctttcggtggctataggtgaagatccagctacactcgaagaggtccacgag
ccttatctcattttagaaggctatttgaaaagaacccctcaaggcagggtggtgacagcc
cgggcttatgaaaagttaaaagtcagccttccccctagccaagaagagttattttga
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