Methylacidiphilum caldifontis: IT6_05185
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Entry
IT6_05185 CDS
T09436
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
mcao
Methylacidiphilum caldifontis
Pathway
mcao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IT6_05185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcao03019
]
IT6_05185
03016 Transfer RNA biogenesis [BR:
mcao03016
]
IT6_05185
Enzymes [BR:
mcao01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
IT6_05185
Messenger RNA biogenesis [BR:
mcao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
IT6_05185
Transfer RNA biogenesis [BR:
mcao03016
]
Prokaryotic type
tRNA degradation factors
IT6_05185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
KH_1
PNPase
S1
KH-I_KHDC4-BBP
KH_2
KH_KhpA-B
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
QSR89658
LinkDB
All DBs
Position
complement(1104431..1106554)
Genome browser
AA seq
707 aa
AA seq
DB search
MPEYTTRKFGDQTLVFETGKLAKIADGSVTVSYGETAVLVTVVSVTELKEDQDFLPLQVE
YREKAAAAGRFPGGYFRKEGRPTDKEILTSRMIDRPLRPLFPKGYFYETQVLGTLLSADG
QNDPDVMAINGASAALMVSDIPFNGPVGAVRVGQIDGRWIINPTHREREISDIDLVYVGN
EHYPLMIEGSAREIAEEEFVKALEFAHQNIQEIIDAQKELAQKAGKPKRRCVLFEENLAI
TKRIAELFYSQIQEALYTPSKTERHQKLHKLKEELSIKILEEFPTATPREITWSFDSLQK
TIFRTNVLATQKRCDGRGLEDIRPISIETSVVPRSHGSSLFCRGETQALCMATLASLNEA
QELDAYGGGEQSKRFLLHYFFPPFSVGEVGRVGGQSRREIGHGALAERSLLPVIPSEIDF
PYAIRVSSEILESNGSTSMATVCGGSLALMDAGVPLKTSVAGISVGLVKGNEEDSDWSQY
CLLTDIMGLEDHYGDMDFKIAGTRKGITGFQLDLKLSGIPLEVMEKAIFQSKKARMIILD
CMDKVINAPRSEISKHAPRIEKIKIHPDKIGLLIGPGGKTIKKISTESGAEITIEDDGTV
MIYSSSADSLEAARVMIEDMVGEVTVGGLYRSKVVSVKDFGCFIEIKGKGEGLVHISELS
DTPVRRVDQVVRVGEEIWVKCIGVDEKGRYKFSRKAAMKELHAKRTE
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgccagaatatacaacaaggaaatttggagatcagactttagtctttgaaacaggaaaa
ctggcaaaaattgctgatggatcagtgaccgtatcgtatggagaaacagctgttctagtg
accgtggtttctgtaacggagttaaaagaggatcaggattttttgcccctccaagttgaa
tacagggaaaaggctgcagcagcaggaagatttccaggtgggtactttagaaaggaaggc
agacctaccgataaagaaattcttacctcaagaatgattgatagacccttgcgtcccctt
ttccctaaagggtatttctatgaaacccaggttctggggaccttgctttccgctgacggt
caaaatgatcctgacgtgatggctattaatggagcatctgcagctctgatggtctctgac
ataccctttaacggaccggttggagcggtgagggttggacagatagatgggcgctggata
atcaatcctactcatagggaaagggaaattagtgatattgatcttgtttatgtgggaaat
gaacattatcctttgatgatcgaaggaagtgcacgtgaaattgccgaagaagaatttgta
aaagctcttgaatttgctcatcaaaatattcaagagattattgatgcacaaaaagaactt
gcccagaaagcgggaaaacccaaaagacggtgtgtactctttgaagagaacctagctatt
acaaagcgcattgctgagcttttttattctcaaatccaggaagcactctacacgccttca
aaaaccgagcgacatcaaaagctgcacaaacttaaagaagaactgtccattaaaattctg
gaagaatttcccacagccactccccgggagataacctggtcatttgacagtctgcagaaa
actatttttcgcactaatgtattggcaacgcaaaagcgttgtgatggaagggggcttgaa
gatattagaccgataagcatagagacgtccgttgttccaaggtctcacgggtcatcttta
ttttgccgaggagaaacccaggcgctgtgtatggctacactggcctcattgaatgaggcc
caggaattggatgcgtatggaggaggagaacagagtaagcggtttttactccactatttt
ttccctccctttagcgtaggagaagtgggaagagttggtggacaaagccggagagaaata
ggacatggtgctcttgcggaaagatctttgctgcctgttattccttctgagatcgatttt
ccttatgctattagggtaagttctgaaattcttgagtctaacggttcaacgtcgatggca
accgtctgtggaggtagtcttgctttaatggatgcgggagttcctcttaaaacttcagtt
gcaggtatttccgtgggtttggtaaagggtaacgaagaggattcagattggtcacagtat
tgccttttgaccgatattatggggcttgaagatcattacggagatatggattttaagatc
gccggaacccggaagggaataactggttttcagctggatttgaaacttagcggcattcca
cttgaggttatggaaaaagccatattccaatcaaagaaagcccgaatgattatcctggat
tgcatggataaggtgattaatgctcctcggtcagaaatatcaaaacatgcgcctcgtata
gagaaaataaagattcatcctgataaaattgggcttttaatcgggccaggggggaagaca
atcaaaaaaatatctactgaatctggggctgaaataaccatagaagacgacggtacggtg
atgatctacagttcttcagcggatagccttgaagcagcaagggtcatgattgaggacatg
gttggagaggtgacagtgggcggattataccgaagcaaagtggtatctgtaaaggatttt
ggatgttttatcgaaataaaaggaaaaggagaggggcttgttcatatatctgaactttct
gacacacccgtaagaagggttgaccaagttgtcagggttggtgaagaaatatgggtaaag
tgtattggagtggacgaaaagggtcgctataaatttagcagaaaggcggcgatgaaagaa
cttcatgccaagaggactgaataa
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