Methylacidiphilum caldifontis: IT6_07350
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Entry
IT6_07350 CDS
T09436
Name
(GenBank) RNA polymerase sigma factor RpoD/SigA
KO
K03086
RNA polymerase primary sigma factor
Organism
mcao
Methylacidiphilum caldifontis
Pathway
mcao02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mcao00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
IT6_07350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcao03021
]
IT6_07350
Transcription machinery [BR:
mcao03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IT6_07350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
QSR88198
LinkDB
All DBs
Position
complement(1581345..1582208)
Genome browser
AA seq
287 aa
AA seq
DB search
MDNNDSALKLYLREISQIPLLTKEKEVELAKRIQQGDQEARRQMIQANLRLVVKIAHDYA
NSGLPLPDLISEGNIGLMKAVDRFDPSKGGKLSTYAAWWIKQSIKRALANQSKTIRLPVH
LVDKIAKMRRVAMQLSEILGRDPTDEELAEELGMSTTKVAELRTIAIRPASLDATVGEEE
DGTSLGELVKDESATSPDQSVLDQNLKNTIMELLPKLDERERKILSLRFGLEGNEQMTLE
EIGKEFHVTRERIRQLQNIALRKIRKELEKQEKGKNRFSSKQPLKTE
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atggataacaacgattctgctctcaaactttatttaagagaaataagtcaaattccgctt
ctaacaaaggaaaaagaagtggaattggctaaaagaatacaacagggcgatcaagaggca
aggcgccaaatgatccaagccaacttacgtcttgttgttaaaattgctcatgactatgcc
aatagcggccttcctcttccagacttaatttctgaaggtaacattggtcttatgaaggct
gtagaccggtttgatccttcgaaaggaggaaaactcagcacatatgcggcatggtggatc
aaacagtcaattaaaagggcattagccaatcaaagcaagacgattcgactccctgttcac
ctggtagacaagatagccaagatgagaagggtggctatgcagctctctgaaattcttggg
agagatccaaccgatgaagaacttgctgaagaactgggcatgtccacaactaaagtcgcc
gaattaagaacgattgcaataagaccggcttcccttgatgctaccgttggtgaagaagaa
gacgggacttctttaggggaactcgttaaagatgagtctgctacaagtccagaccaatca
gttcttgatcagaatctcaaaaataccatcatggaattgctcccaaagcttgatgagagg
gagagaaaaatattaagcctcagatttggtttggaaggaaacgaacaaatgactttggaa
gaaatcggtaaggaatttcatgtaacccgtgaaagaatcaggcaacttcaaaatattgct
ttacgaaaaattcgaaaagagctagaaaaacaagaaaaaggaaagaaccgtttctcgagt
aaacaacccttaaagactgaataa
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