Methylacidiphilum caldifontis: IT6_07630
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Entry
IT6_07630 CDS
T09436
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mcao
Methylacidiphilum caldifontis
Pathway
mcao03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mcao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IT6_07630 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcao03400
]
IT6_07630 (mfd)
Enzymes [BR:
mcao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IT6_07630 (mfd)
DNA repair and recombination proteins [BR:
mcao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IT6_07630 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
QSR89784
LinkDB
All DBs
Position
complement(1642796..1645978)
Genome browser
AA seq
1060 aa
AA seq
DB search
MIENMAATSLNLQENKENFCSGLGNKEMTFSFEKWLDHPLLKQHHQHLFEQSNWRIDSLP
ISAQSFLLASFLHEYHTPLLLIAENIKKTNELALGLECWGQPYLILPEIEPASTGVLVDP
TLLAERLRTAYRLLDFSSGAIITTEQAIAEALPSPGLLKEKRQPIRVGDTLDRSILMEKL
IDAGYERVDTVDCRGQFTVRGAIIDIFCWDSLYPLRTEWEGNRIVSLRQFNPITQRSFKP
IAESFVCFFNIEEIEKGKSSLYDYLPKTILTFWSTAPIIPAPDVPIHFESHLFLESPKGD
WFHQERRWQLFLTELGRWIEKKWEVIIFVNNEGEESRLKEILNNQGIPTEKILFYRSPLL
KGFSWPAAKLAILTDAEIFGRYQNQKILLHGQENKDYQQKPSSSDIFEQWKEGDIVVHLQ
HGICKFMGIKTMDGTNSEMVELEFDQKAKLYVPIDQAYLISRYIGGTKKLPKLDSLGGTR
WIRAKNAAQKAVTDLAERFLKINAEREVLEGFAFPKDDHWQREFEEAFIYEETPDQLKAI
EETKQDMESKKPMDRLICGDVGFGKTEVAIRAIFKAIMGGKQAVFLAPTTVLAKQHFNTL
TERFADYPIRTALLCRFVKNSEEKETLCGLKNGTIDVVVGTHRLLSTDVEFKNLGLIVID
EEQRFGVLQKEKWKERFRLIDVLLLSATPIPRTLYLAMAGARDMSLIETPPPNRYPIETI
VGPYDERIIRQAIERELNRGGQVYFLHNRIKTIEKVASRIKALLPSIKLDIGHGRMKKHE
LEEVMERFIEGKTDVLLATSIIENGLDIPNANTIIIDRADLFGLADLYQLRGRVGRSNQK
AYAYLLLPRDLFIQTDAKKRIRAMQEHSQLGAGFQIALRDLEIRGAGNLLGTSQSGHISS
IGFELYCKLLKKAIRKIQGKETSSLNECRVSLDFLIPEPGGGRHALAYIPFSYMEKRQDR
LHAYRQLAEALSLQELEEIKLSWKDRFGTWPEPVEYLFSIVEIRIIAASRGIERVETEGE
KLKLMRNNEFLFTKQGKYPRLIEAEPKDKILQIKKWLETF
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgaaaacatggcagctaccagtttaaacttgcaggagaataaagaaaatttttgt
tctggcctaggaaacaaggaaatgactttttctttcgaaaaatggctggatcaccctttg
ttaaaacaacatcatcaacacctgtttgagcaaagcaactggcgtatcgactccttgccc
atatccgctcaatcttttctcctcgcttcttttcttcatgagtatcatacaccactgcta
ctgatcgctgaaaacataaaaaaaaccaacgaacttgctcttggtttagaatgctggggg
caaccttatcttatccttcccgaaattgagcctgcttcgacaggagtcttggtggatcca
acattgctagccgaaagattaaggacagcttatcggcttttggatttttcatctggagcc
attattactaccgaacaggccatagccgaagccctgccttctccaggacttttaaaagaa
aaacgccagccaattcgagtcggagatacgctagatagaagcatcttgatggaaaagctt
atcgatgcaggttatgaaagagtcgatactgtagattgtagaggtcagttcacggtacgt
ggagcgatcatagacatattttgttgggatagtctctatccactcagaacggaatgggaa
ggcaatagaattgtttctctaagacaatttaatcctatcactcaacgttctttcaaacca
attgcagaatccttcgtttgctttttcaatattgaagaaatagagaaaggcaaatcctct
ctctatgattatttgcctaaaaccattcttacgttctggtctacagctcctataattcca
gctccagatgtacccattcattttgaaagtcatcttttccttgagagtccaaaaggagat
tggttccaccaagaaagaagatggcaacttttccttactgaacttgggaggtggatagaa
aaaaaatgggaagtgattatttttgtcaataatgaaggagaagagtcccgtctcaaagaa
attttaaataatcaaggcatacctactgaaaagattctcttttataggagtcctctttta
aaaggattttcatggcctgcagctaagcttgcaattcttacggatgctgaaatttttgga
aggtatcaaaaccaaaaaattttgctgcatggtcaagaaaacaaggattatcaacaaaaa
ccttcaagcagcgatatttttgaacaatggaaagaaggagatatcgtcgttcacttgcaa
catgggatctgcaagtttatgggcatcaaaaccatggatggaactaactctgaaatggtt
gaacttgagtttgatcagaaagcaaagctttatgttcccatagaccaagcctatcttatt
tctcgatacattgggggcacaaaaaaactgcccaagctcgactctctaggaggaaccaga
tggataagagctaaaaatgctgcacaaaaagcggttacagatcttgccgaaagatttctc
aagatcaacgcagaaagagaagttctggaagggtttgctttccctaaagatgatcattgg
caaagggaattcgaagaagcctttatttatgaagaaactccagatcaactgaaggctata
gaagaaacaaagcaagatatggaaagcaaaaagcctatggataggcttatatgcggcgat
gtcggttttggcaaaacagaggtggcgattcgggcaatatttaaagcgataatggggggc
aaacaagccgtttttcttgctcccactactgtccttgccaagcagcatttcaatactctt
actgaaagatttgctgattacccgatacgaacagctttgctttgtcgttttgttaaaaac
agcgaagaaaaagaaacgctttgtgggctaaaaaatggaaccatagacgttgtcgtcgga
acacacaggcttctgtcaactgatgtggagttcaagaacttgggactgattgtcattgat
gaagaacaacgatttggtgttttgcaaaaagaaaaatggaaagaaagatttcgattaata
gacgtattattgctttcagcgacacctatacctcgaaccctttatttagccatggccgga
gccagggacatgagtctgattgaaacccctcctcccaatcgttatcccatcgagaccatt
gtcggtccttatgatgaaagaatcatccggcaagcaatcgaaagagaattaaatcgaggg
ggacaagtttactttctgcacaatcggataaaaaccattgaaaaagttgcatctcgtata
aaagctcttttgccttctatcaaattggatattggacatggaagaatgaaaaaacatgaa
cttgaagaggttatggaaagattcatagaaggtaaaacggatgttttgcttgccacaagc
ataatagaaaacggattggatattcccaatgccaacacgattatcatcgacagggctgat
ctgtttggacttgcagacctctatcagttaaggggaagggtaggaagatcaaatcaaaag
gcttacgcttatcttttgctcccacgagatttgttcattcaaactgatgccaaaaaacga
atcagggccatgcaagaacactctcaacttggtgctggcttccagatagctttaagggac
ctggaaatacgaggagctgggaaccttttagggacctctcaaagtggccacatttcctcg
ataggatttgaactctattgcaaactgctaaaaaaagccattcgaaaaattcaaggtaaa
gaaacctcatctttaaatgaatgccgagtctcccttgatttcttgattcctgaaccaggc
gggggaagacatgctttggcttacattcctttttcctacatggaaaaaagacaagacaga
ttgcatgcctacaggcaattagcagaagcattgagccttcaagaactcgaagaaatcaag
ctaagttggaaagataggtttggaacatggccagaacccgtagagtatctcttttcaatt
gtcgaaatccgcatcatagcagcaagcagaggtatagaaagagtcgagaccgaaggtgaa
aagttgaagctaatgagaaacaatgaatttctattcacaaagcaaggcaaatacccacgc
ttgatagaagctgaacctaaggataaaattctacaaataaaaaaatggttagaaaccttt
taa
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