Methylacidiphilum caldifontis: IT6_08460
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Entry
IT6_08460 CDS
T09436
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
mcao
Methylacidiphilum caldifontis
Pathway
mcao03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mcao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IT6_08460 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcao03400
]
IT6_08460 (uvrB)
DNA repair and recombination proteins [BR:
mcao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IT6_08460 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
IT6_08460 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
DEAD
UVR
UB2H
AAA_22
DUF3091
Arm-DNA-bind_5
DUF87
Cas3-like_C_2
HTH_Tnp_2
AAA_7
DUF6967
TrwB_AAD_bind
SRP54
Motif
Other DBs
NCBI-ProteinID:
QSR88399
LinkDB
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Position
1818105..1820180
Genome browser
AA seq
691 aa
AA seq
DB search
MFEKNLDRKFKVVSPFEPCGDQGKAIEELSEGIKAGKKHQVLLGVTGSGKTFTIAKCIEK
VQKPTLIICHNKTLAAQLYSEYKQFFPDAAVEYFVSYFDYYQPEAYIPSTDTYIEKDSSV
NVEIERLRLSATNSLLTRRDVIVVASVSCIYGLGSPEDYESLCCQIEVGQSISRNQFLAL
LVEMLYERNDFQLTRGKFRVRGDVVEICHVSPDRGLRIEFFGNRIERITEFELQTGRSVC
RLQKELIFPASHFVTTSEKLKRAIRSIRQELDERIAELESKGKLLEAQRLKLRTENDLEM
LEELGFCNGIENYSRHLSGRAAGSAPYTLLDFFPQDFLTVIDESHATIPQIQGMYEGDMS
RKRTLVEHGFRLPSALDNRPLSFSEFEAKIGQLIYVSATPGEYELRKTEGRVIEQIIRPT
GLLDPEVEVRPLEGQIDDVIKESSLRIKEGQRVLVLTLTKQTAEDLSDYLRELGFKVRYL
HSELDAIERVEILRELRSGGCDVLVGINLLREGLDLPEVSLVCILDADKEGYLRSEKSLI
QIAGRAARHEKGKVILYADNLTQSIKKLIAVTNYRRNKQLKYNEQHGITPKSVRAKELVS
LHGLIRAEEKEAFTFKDIQTKSDYMELIKELGAAMIEASAKLEFEKAALFRDQIEELKRR
LKEGKEPSADFSFIPLGERKTKRKKKVLRGG
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaaaaaatttagatagaaaatttaaggttgtttctccttttgaaccttgtggg
gatcagggaaaagccatagaagaactttctgaggggattaaagcggggaaaaaacatcag
gtgctacttggtgtaacaggttcgggaaagacttttaccattgccaaatgcattgaaaaa
gtccaaaaaccaaccctgatcatttgtcacaataaaacccttgctgcacaattatatagc
gaatataagcaatttttccctgatgctgctgttgaatattttgtatcctatttcgattac
taccagcctgaagcttatattcctagcacagacacttacatcgagaaagattcgagtgtc
aatgtggaaatagaaagattaaggctttcggcgacaaactctttgctcacgcgccgggat
gttatcgttgttgccagtgtttcctgtatttatggtttaggttcaccggaggactacgag
agtttgtgttgccaaatagaggttgggcaaagcatctcaaggaatcaatttttggcactg
cttgtagagatgctttatgaaagaaacgattttcagctgactcgaggaaaatttcgggta
agaggggatgtggttgaaatttgtcatgtttctcccgatcgaggtctgaggatagaattt
tttggaaatcggattgaacggatcacggaatttgaactgcagacaggaagaagtgtatgt
cgtcttcagaaagagttgatattcccagcgagtcactttgtaacaacgtcggaaaaatta
aaaagagccattagatcgattcgacaggaactcgacgaacgtatagccgaacttgaatcc
aagggtaaactgttagaggctcaaagattgaagttaaggacggagaatgacttggaaatg
cttgaggaactgggtttttgtaatgggattgaaaattatagtcggcatttgagtggacga
gctgcgggttctgctccctatactttgcttgatttcttcccccaagattttttgaccgtt
atcgatgaaagtcatgcaaccattcctcagattcaaggtatgtatgaaggagatatgtca
aggaaaaggactcttgtggagcatggttttagactgccttcagccttagacaataggcct
ctatccttttctgagtttgaagctaaaattggacagctgatttatgtttctgctactcct
ggagaatatgaattgagaaagacagaagggagggtcatcgagcaaattatcaggcctact
gggttattagatcctgaagttgaagtgcgcccccttgaaggtcaaatagacgacgtgatc
aaagagagctctttacggataaaagaaggccaaagagtacttgtgctgacactgacaaag
caaactgctgaagatttatcagattatcttagagagttaggtttcaaagttcgttatctt
cattctgagcttgatgcgattgaaagggttgagatattacgtgaacttaggtctggaggt
tgtgatgttctagtgggcataaatctcttaagagagggactagacctgcctgaagtttca
ctagtatgtattcttgatgcggataaggaaggatatttaagatctgaaaaatctcttatt
cagattgctggacgagctgctcgtcatgaaaagggtaaagtcatactttatgcagacaac
ttgactcaatcgattaaaaagcttatcgccgtcaccaattatcgaagaaacaaacagtta
aagtataacgagcaacatggcataacaccaaagagtgtgagagcaaaggagttggtcagt
cttcatgggttgataagagctgaagagaaagaagccttcacttttaaggatatccagact
aaaagtgattatatggagttgataaaggaactgggggctgccatgatcgaagcctctgca
aaactggaatttgaaaaagcagctcttttccgtgatcagatagaagaacttaaaagaagg
ttaaaagagggaaaagaaccgtcagcggatttttcttttattcctttaggagaaaggaaa
acaaaacgaaaaaagaaagtattgaggggaggatag
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