Methylacidiphilum caldifontis: IT6_09770
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Entry
IT6_09770 CDS
T09436
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
mcao
Methylacidiphilum caldifontis
Pathway
mcao02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mcao00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
IT6_09770 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcao03021
]
IT6_09770 (rpoD)
Transcription machinery [BR:
mcao03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IT6_09770 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Tnp_DNA_bind
Exonuc_VII_L
Methyltransf_31
Motif
Other DBs
NCBI-ProteinID:
QSR88633
LinkDB
All DBs
Position
2117214..2119088
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AA seq
624 aa
AA seq
DB search
MKKKSKKNNDVVSLSSNHSTSHQNNSPLEAEDKCRNEEQKEKSLEELPVHFSLDKNCSSN
LLVLEDRQIASRLAKIWEESPDKQEKLRTLIKLAKEQGYLTYDDINESLPESVNNPEEIE
AVYDFLRTLEIEIIDSSDVDNAKPVAVSEAEEIEGKESKLDIVDDPVRMYLKQMGQVPLL
TREQEVEISKRIEQSEAMVKSCLHSFHFIAKEYLNLAKKLMQGKERFDRVIQDKHVECRE
EYLATLPDLIERLELLIEKKELLYSQLIEYPEKSKERKSLEKEIQRQKGCLEKLFEKFYF
KQKVIEDFVQTSEIYYQEIIRVEKDLENFEKDDGVDEEGKQKQLECIQSKLKELEKQIQL
PLCVYKEKHQELKNWLSTAIKAKSEMVEANLRLVISIAKKYSNRGLSFLDLIQEGNMGLM
KAVEKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLMRVQKQLIQE
LGREPTPEEIADETQMSVDRIRTIIKMAQHPISLQAQVGESEDTTFGDFIEDKAAENPSE
MTGYSLLREKIKDVLSTLTERERTVIEQRFGLLDGYPRTLEEVGKQFRVTRERIRQIEAK
ALRKMRHPTRLRHLKGFLEIDKLF
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagaaaagcaaaaaaaataatgatgttgtctctctgtcttcaaaccattcaact
tctcatcaaaacaactctcccctcgaggctgaagataagtgtagaaatgaggaacagaaa
gaaaaaagtttagaggaactacccgtccacttttccttggataagaattgttcatctaat
ttacttgttctggaagatcggcagatcgcttctaggcttgccaagatttgggaagaatcc
cccgataaacaggaaaagctaaggacattgattaaattagccaaggaacagggatactta
acctatgatgatattaatgagtcgctacctgaaagtgtaaataatccggaggaaattgaa
gcggtttatgatttcctaagaacccttgaaatcgaaattattgacagctcagatgttgac
aatgctaaaccggtagccgtttcagaggcagaggagattgaaggcaaggaatccaaactc
gatatcgttgatgatcctgttcgaatgtacttgaagcagatgggccaagtcccccttttg
actcgcgaacaggaggtggaaatttccaagaggattgagcaatccgaagcgatggtcaaa
agctgtttgcatagctttcattttattgcaaaagaatatttaaacttggctaaaaaattg
atgcagggtaaggagcgctttgaccgcgttatccaagacaaacatgtggaatgtcgcgaa
gaatatttggctacactgcctgatctcattgaaaggttggagttgttgatcgagaaaaaa
gagcttctttattcacagctgatcgaatatccggaaaagtctaaagaaagaaagagcttg
gaaaaagagatccaaagacaaaagggatgcctagaaaagctatttgaaaagttttatttt
aaacagaaggttatcgaggatttcgttcaaaccagtgaaatctactatcaagagattatc
cgagtagaaaaagatttggaaaatttcgagaaggatgatggggtggatgaggagggaaaa
cagaaacagcttgagtgcattcaatccaaactcaaggaactagaaaagcagattcaactt
cctctttgtgtttataaagaaaaacatcaggaattaaaaaactggttgagtacagcgatt
aaggctaaaagtgaaatggtagaggccaacctaaggcttgttatatccattgcaaaaaaa
tatagcaatcgtggactttcttttttggatctgattcaagaaggcaacatggggctgatg
aaagcggtcgaaaagtttgagtatcgaagaggctataaattttcgacctatgccacatgg
tggataaggcaagcgatcacaaggagcattgctgatcaagctcggacgattcgaattccg
gtccacatgattgaaacgattaacaagttgatgcgtgttcagaaacaattgatccaggaa
ctcggtagagagcctacccctgaagagatagcggatgaaacccagatgagcgtggacagg
attcgaacgatcattaaaatggctcaacatcccatttctcttcaagcacaggtgggggag
agcgaagatacgacgtttggagattttattgaagataaagctgctgaaaatccctctgaa
atgaccggctattccctgttaagagagaaaattaaggatgtactttcgacattgacggaa
cgcgaaaggaccgttattgagcaacggtttggattgttagatggctatccacgaaccctt
gaggaagtgggcaagcagtttcgggtcactcgtgaaagaattcggcagatcgaagctaaa
gctctaaggaaaatgcgacatcctacaagattgcgtcatctgaaaggattccttgaaata
gataagcttttttaa
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