Methylacidiphilum caldifontis: IT6_10390
Help
Entry
IT6_10390 CDS
T09436
Name
(GenBank) HD domain-containing protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
mcao
Methylacidiphilum caldifontis
Brite
KEGG Orthology (KO) [BR:
mcao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcao03019
]
IT6_10390
Messenger RNA biogenesis [BR:
mcao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IT6_10390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
TraI_2
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QSR88736
LinkDB
All DBs
Position
complement(2251333..2252472)
Genome browser
AA seq
379 aa
AA seq
DB search
MLNEEKIESLSLLSEKNMQQGTLRGSIRCQIVAIKESISKNGSSFLDLELADHTGTKKIK
IWQESAQNYSQLLSTPLNTFVELSAVFRYTPFGIQATAHALRPLEREEIEELLLKKGNPQ
MEKDWEFLQKKIADLEDPRLRVLCQQFLSVHGEKFKRAAAAREYHHNFRGGLLRHVCQMI
EASEALRQAYPSYNWDLIKAGILFHDCGKLWENDFQQNGFIMKRSKIAELIGHIPIGVEV
VNSLWRTLKDKAEFLHPFTPPAEEIRIHLLHLIIAHHGLREYGSPTTPRTPEAWIVHILD
NLDAKLEMFRCAYAEGKEIAPGIFEKKPPLEGNPIAPLDKFSFLPAPPSLQLISSNFVED
FSKDVLPLPLEEKDINSID
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atgctcaacgaagaaaaaatcgaaagtctttcgctactcagcgaaaaaaacatgcaacaa
ggaactcttcggggctctatccgttgtcagattgtagcgatcaaagaatcgatttcgaaa
aacggttcctctttccttgatttagaacttgctgatcacactggaactaaaaaaataaaa
atatggcaagaatcagcacaaaattactcccaattgctatcaactcctctgaatactttt
gttgaactctcagctgttttccgttataccccttttggcattcaagccacagctcatgct
ctcaggcctcttgagagggaggaaatagaagaacttctccttaaaaagggaaatccccaa
atggagaaagactgggagtttcttcaaaaaaaaatagcagatttggaagatcctcgactt
cgagttctttgtcagcaatttctttcagtccatggtgaaaaattcaaaagagccgccgca
gccagagaataccatcataattttcgtggaggacttttgcggcatgtttgtcaaatgatc
gaagcatcagaagctctaaggcaagcctatccatcctacaactgggatctcatcaaagcg
ggaatccttttccatgattgtggaaaactttgggaaaatgattttcagcaaaatggtttt
atcatgaaaaggagcaagattgctgaactgatcggtcatatcccaatcggggtagaagtc
gtcaattcattatggagaactttaaaagataaagcagagtttcttcatccgttcacccct
cctgccgaagagattcgaatacatctccttcatttgattattgcccatcatggccttaga
gaatatggttcacccaccactccacgaactcccgaagcttggattgtccatatattggat
aatctcgacgcaaaactagagatgtttcgctgtgcatatgccgaagggaaggaaattgca
cctggcatctttgaaaagaaacctcccctagagggtaacccaattgctccccttgataaa
ttttctttcttacccgctcctccttcactgcaactgattagctctaattttgtagaagat
ttcagtaaagatgttctaccactgcccttagaagaaaaagatataaactcaatcgattaa
DBGET
integrated database retrieval system
