KEGG   Mycoplasmopsis canis LV: AAW50_01100
Entry
AAW50_01100       CDS       T03936                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
mcas  Mycoplasmopsis canis LV
Pathway
mcas03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:mcas00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    AAW50_01100
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mcas03021]
    AAW50_01100
   03400 DNA repair and recombination proteins [BR:mcas03400]
    AAW50_01100
Enzymes [BR:mcas01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     AAW50_01100
Transcription machinery [BR:mcas03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     AAW50_01100
DNA repair and recombination proteins [BR:mcas03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      AAW50_01100
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 SMODS DUF2634 Ribosomal_S13
Other DBs
NCBI-ProteinID: AKF41035
LinkDB
Position
complement(295312..299754)
AA seq 1480 aa
MVNNSSLNMRNKEKIKKITLSLATREDVKSWSHGEVTKPETINYKTYKPEKDGLFDELIF
GPVIDYKCPICGTKYKKSDVNTICSKTQQCKKYNPEILPKISRRSRMGHISLHTPVVHFW
FFKIDHSVISNLLGLRIEDGSEKQAVTKSDLEKLIYYKSHIVLESGSLKSLKKNTIIDIN
EAANIYDKALEELKELNQDDEEALENITEALYELREYAQSQDGKDFGIDFYQYNNVIREY
SDAIIGTGSQAIEYLLKNLDLEKEQQIVQEQIDKINNEINKQRDVSTSKIQQRQKLYKRL
TIISSFIRSGQKPTDMLIYELPVIPADLRPLVQLDGGRHSTSDVNELYRRIIIRNNRLAK
WNETDAPMLIKQNEYRMIQEAVDALIDNARKKPTPVSSRDNHPLKSISDGLTGKKGRFRQ
NLLGKRVDYSARSVIVGGPSLKMYEVGVPRDIAAKLFEPWIIKALIEKEDGITSIKTAKK
LIENLDPRIWPYVEKAIENRPVLLNRAPTLHRLSIQAFQPVLIRSKAIKLHPLVTTAFNA
DFDGDQMAIHVPVSEKAVREAQELMLASKNILGPKDGEPIINPSQDIILGLYYLTIEKTG
EKAIGEGNYYQNLDELMLAYERGKVTLHSRVILPIKSLNKPQLLNATKKPYLFSTVGKFL
LNSVLPADFEFVFGKYVEKTYKKNSKGETKVSEKEVIHTSRYDLERYTLDYGQNFREEIA
NTELNLALSKKDIARIIRKIYEEYVAVITIEDIAKVLDSVNKLNFKDQLDNLKLLVDYKG
DLIPNSHAKLINQFISEEFEKISYTYKAADSLKDSVEWSINEYSKGLEKVWFRYSNYVSE
ILDKIKELGFKYSTISGTTISMNDVKTLDSTSEHIKEGEEYINKLKEFFENGYLTDDERY
KLTIEKWAKVKDKIEKSLKEVTKSDLDNPLFMMMTSGARGNSSNFTQLAGMRGLMSNNTK
VLKADAENDRVVRSTIEIPVKSSFLRGLSAYEFYSSTHGARKGLTDTALNTAKSGYLTRR
LVDVAQSIVVREADCGSDFGFVVKAIKDTKTDTVIETLWERIEGRYTNKAIYDENNNLVI
DANQLITPEIANKIVNDLKLEQVEIRSVLSCHTKNGVCKVCYGKDLASNRVVNIGEAVGI
VAAQSIGEPGTQLTMRTFHTGGVAGVEDITGGFGRLIELIDAYDNPWGKPAEISKVYGVI
AKIEQVVSKDTGKVTDITEVTIATKDDQGNDYIEVVTGRTSQKLRVKVGDSVIPGQKIFE
GPIVLNQLLNATDARTVQNYLLKEIQRLYRLQGITIADKYIEIIISQMLSKILIIDPGDS
RFFSGALVDTFVYQNENAKLLAAGKKPAYGKVKISGAKQIPLLSSSFLAAASFQETAKIL
VNSSVGQRVDQLEGLKENIILGQKIPAGTNSDYELKGKYDIREFRSYFPNKIDPNNYVEP
TLDISEDELSIDDITEESYNDEIFDQNDEYNEFYDFGDEV
NT seq 4443 nt   +upstreamnt  +downstreamnt
atggtgaataattcgtctttaaacatgcgtaataaagaaaaaattaaaaaaataaccctc
tcattagctactagagaagatgtaaaaagttgatcacatggtgaagttactaaaccagaa
acaattaactataaaacttataaacctgaaaaagacggtttatttgatgagttaattttc
ggcccagttattgactataaatgtcctatttgtggtactaagtacaaaaaaagtgatgtt
aatactatttgttcaaaaacgcaacaatgtaaaaaatacaaccctgagatacttccaaaa
atttcaagaagaagtagaatgggtcacatctcattacacacacctgttgtacacttttga
ttctttaaaatagatcactcagttatttcaaatctacttggtcttagaattgaagatgga
agtgaaaaacaagcagtaactaaatctgatcttgaaaaacttatttattataaatcacat
atagttcttgaaagtggttcattaaagtcacttaaaaagaatacaattattgatattaat
gaagccgcaaatatttatgataaagctttagaagaattaaaagaactcaatcaagatgat
gaagaagctttagaaaatattacagaagcattgtatgagttaagggaatatgctcaatct
caagatgggaaagattttggtattgatttttatcaatataataatgttattagagaatat
tcagatgcaattattggtactggatcacaagctattgaatatttattaaaaaatcttgac
cttgaaaaagaacaacaaattgtccaagaacaaatcgataaaatcaataatgaaattaat
aaacaacgtgatgtttcaacatcaaaaattcaacaaagacaaaaactatataaacgttta
acaataatttcttcatttataagatcaggtcaaaaaccaactgatatgttaatctacgaa
ttacctgttattcctgcagatcttaggccattagttcaattagatggaggaagacactca
acaagtgatgttaacgaactttatcgtcgtattattattagaaacaaccgtctagctaaa
tgaaacgaaacagatgctccaatgcttattaaacaaaatgagtatcgtatgattcaagaa
gctgttgatgctttaattgataacgctagaaagaaacctactccagtttcttcaagagat
aatcaccctcttaaatctatttccgatggactaacaggaaaaaaaggacgttttcgtcaa
aatcttttagggaaacgtgttgactattctgcgcgtagtgttatcgttggagggccttca
ttaaaaatgtatgaagttggtgttcctcgtgacattgctgcaaaattatttgagccatga
attattaaagcgttaatagaaaaagaagatggaattacaagtattaaaacagctaaaaaa
ttaatagaaaatcttgatccaagaatttgaccatatgttgaaaaagctattgaaaatcgt
ccagttcttttaaaccgtgcacctacattgcaccgtctttcaattcaagcctttcagcct
gtcttaatacgttcaaaagctataaaattacacccattagtaacaaccgcttttaacgct
gacttcgacggggaccaaatggctattcacgtaccagtatctgaaaaagcagttcgtgaa
gcacaagaattaatgcttgcttctaaaaatattttaggacctaaagacggagaacctatc
attaacccttcacaggatattattttaggtctttactatttaacaattgaaaaaacaggg
gaaaaagctattggtgaaggtaactattaccaaaaccttgatgagttaatgttagcttat
gaaagaggtaaggtaactttacattcaagagtaattcttcctattaaatcattaaataaa
ccacaattactgaatgctactaaaaaaccatatttattctcaactgtcggaaaattctta
ctaaatagtgtgcttccagcagattttgaattcgtttttggtaaatatgtagaaaaaaca
tataagaaaaattcaaaaggtgaaacaaaagtttcagaaaaagaagttattcatacttca
agatatgatttggaaagatatacgcttgattatggacaaaacttccgtgaagaaattgct
aatacagaattaaacttagctttatctaaaaaagatattgcaagaattattagaaaaata
tatgaagaatatgttgcggtaataacaattgaagatatagcgaaagttttagattctgtt
aataaattaaactttaaagatcaattagataatcttaaattacttgttgattataaaggt
gatttaattcctaactcacatgctaaattaattaatcaatttatttcagaagaatttgaa
aaaatttcttacacatataaagccgctgactcactaaaagattcagttgaatgatcaatt
aatgaatattcaaagggtcttgaaaaagtttgattcagatattcaaactacgtatcagaa
atattagacaaaattaaagaattaggatttaaatattctactatttcaggtacaacaatt
tctatgaacgatgttaaaacgttagattcaacatcagaacacataaaagaaggtgaagaa
tacattaacaaacttaaagaattcttcgaaaatggttacttaactgatgatgaacgttat
aaattaacaattgaaaaatgagcaaaagttaaagataaaattgaaaaatcacttaaagaa
gttacaaaatcagatttagataacccattatttatgatgatgacttctggagcccgtggt
aattcatctaactttacccagttagcaggtatgcgtggacttatgagtaacaacaccaaa
gttcttaaagccgatgctgaaaacgaccgtgtcgttcgttcaacaatcgaaatccctgtt
aaatcttcattcttacgcggacttagtgcatatgaattttattcatctacccatggtgct
cgtaagggtcttacagatacagctcttaacacagctaaatctggatacttaactcgtaga
ttagtggacgttgctcaaagtatagtagttagagaagcggattgtggatcagattttggt
ttcgttgtaaaagcaattaaagatacaaaaactgacacagttattgaaacactatgagaa
agaattgaaggtagatatacaaacaaggctatctacgacgaaaataataaccttgttatt
gatgcaaatcaattaattacaccagaaattgctaataaaatagttaatgacttaaaacta
gagcaagtagaaattcgttcagtattatcttgtcacacaaagaatggtgtatgtaaagtt
tgttatggaaaagatcttgcttcaaaccgtgtagttaatattggtgaagctgtcggtatt
gttgcggctcaatcaattggtgaacctggaacacagcttaccatgcgtacattccatacc
ggaggggttgctggggttgaagatattacaggtggattcggaagattgattgaattaatc
gatgcttatgataatccatgaggtaaaccagctgaaatttctaaagtatatggtgttata
gctaaaatcgaacaagttgtaagtaaggataccggaaaagtaacggatataacagaagtt
acaatcgcaacaaaagatgatcaaggaaatgattatatagaagttgttacaggtagaaca
tcacaaaaactacgtgtcaaagttggtgattcagttattcctggtcaaaagatcttcgaa
ggtccaattgttttaaatcaattattaaacgcaactgatgctagaactgttcaaaattac
ctattaaaagaaattcaaagattataccgtttacaaggtattacaattgcggataaatat
atcgaaattattatttctcaaatgctttcaaaaattttaattatcgatccgggtgattca
agattctttagtggagcattagttgatacatttgtttatcaaaatgaaaatgcaaaatta
ttagccgctggtaaaaaacctgcttacggaaaagtaaaaatttctggtgcaaaacaaata
ccattgctttctagttcattcttagctgcagcttctttccaagaaacggctaaaatcctt
gttaattcatcagttggtcaaagagttgatcaacttgaaggtcttaaagaaaatattatt
ctaggacaaaaaattcctgccggaacaaactcagattatgaattaaaaggtaaatatgat
attagagaatttagatcatatttccctaacaaaatcgatccaaataattatgttgaacca
actcttgatatttcagaagatgaattatcaatagatgacataacagaagaatcatataac
gatgaaatttttgatcaaaatgacgaatataatgaattctacgattttggggatgaagtt
taa

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