Methylomarinovum caldicuralii: MIT9_P1524
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Entry
MIT9_P1524 CDS
T09494
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mcau
Methylomarinovum caldicuralii
Pathway
mcau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MIT9_P1524
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcau03019
]
MIT9_P1524
03009 Ribosome biogenesis [BR:
mcau03009
]
MIT9_P1524
Enzymes [BR:
mcau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MIT9_P1524
Messenger RNA biogenesis [BR:
mcau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MIT9_P1524
Ribosome biogenesis [BR:
mcau03009
]
Prokaryotic type
rRNA helicases
MIT9_P1524
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
UTP25_NTPase-like
CMS1
Cas3-like_C_2
AAA_19
SUa-2TM
Motif
Other DBs
NCBI-ProteinID:
BCX81942
UniProt:
A0AAU9CQY9
LinkDB
All DBs
Position
complement(1535914..1537614)
Genome browser
AA seq
566 aa
AA seq
DB search
MNSARRSASSCPPIHQDPRYHYVRDFHFRILRDLPEAVLSAVRQAGYESPTPIQAATIPH
VLEGRDVIAQAQTGTGKTAAFALPLLARIDIGDARPQVLVLTPTRELALQVAEAFQTYAA
NLPELHVLPIYGGQEYGRQLRALRRGVHVVVGTPGRIMDHMRRGTLDLSALHTLVLDEAD
EMLRMGFVDDVDWILEKTPAERQVALFSATMPAPIRRIAQRHLRDPEEIKIQVKVTTADT
VRQRYCLLRPHAKLDALTRILEAEDFEAVILFVRTKTATVELAEKLAARGYAVAPLNGDI
PQNQRQRTVEQLKSGWLDIIVATDVAARGLDVQRITHVINYDVPLDTESYVHRIGRTGRA
GRSGDAILFVTPREKRLLLAIERATRKKIEPMELPTAETINSQRLAKFQQRISDTLANQD
VGFFRELLQQYEQEHNVPALDIAAALATLLQGDEPLLLDEKALRAEPNRERRPANGERMT
LRRRSRREAVEMASYRIEVGRNHGVRPGNIMGAIANEAGLDSRFIGRINIHDDFSTVDLP
DGMPREVLRTLKKVWVAGRPLNISKA
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgaattcagcgcggcgcagtgcatcgagctgcccgcccattcatcaagacccaaggtat
cattatgtccgagatttccactttcgcatccttcgagatctgcctgaagccgtcctttcc
gcggtacgccaggccggttacgaatcccccacgccgatccaggccgccaccatcccccac
gtgctcgaaggccgcgacgtcatcgcccaggcccagaccggcaccggcaagaccgccgcc
ttcgccctgccgcttttggcccgcatcgacatcggcgacgcccgcccacaggtgctggtg
ctgacgccgacccgcgagctggccctgcaggtggctgaagccttccagacctacgccgcc
aatcttccggagctgcacgtgctgccgatctatggcggtcaggaatacggccgccagctg
cgcgccctgcgccgcggcgttcacgtggtggtcggcaccccggggcggatcatggaccac
atgcgccgcggcaccctcgatctgtccgccctccacaccctggtgctggacgaggccgac
gaaatgctgcgcatgggcttcgtcgacgacgtggactggattctcgaaaagaccccggcc
gagcgccaggtggcgctgttttccgccaccatgccggcgccgatccgccgcatcgcccag
cgtcacctgcgcgatccggaggaaatcaagatccaggtcaaggtcactaccgccgacacc
gtgcgccagcgctactgtctgctccgcccccatgccaagctcgacgccctgacccggatc
ctcgaagccgaggatttcgaagccgtgatcctgttcgtgcgcaccaagaccgccacggtg
gaactggcggagaaactggccgcccgcggctacgccgtcgcccccctcaacggggatatc
ccccagaaccagcgccagcgcaccgtcgagcagctcaaaagcggctggctcgacatcatc
gtcgccaccgacgtggccgcccgcggcctggacgtgcagcgcatcacccacgtgatcaac
tacgacgtccccctcgacaccgagtcctacgtccaccgcatcggccgcaccggccgcgcc
ggacgcagcggggacgctatcctgttcgtcaccccgcgggaaaagcgcctgctgctggcc
atcgaacgggcgacccggaaaaagatcgagcccatggagcttcccaccgcggaaaccatc
aacagccagcgcctagccaaattccagcagcgcatcagcgacaccctggccaaccaggac
gtcggtttcttccgggaactgctgcagcaatacgaacaggagcacaacgtccccgccctc
gacatcgccgccgcgctggcgaccctgctgcagggggacgagccgctgctgctggacgaa
aaggcgctgcgggccgagccgaatcgggaacgccggccggcgaatggggagcgcatgacc
ctcaggcgccgcagccgcagggaggcggtggaaatggccagttaccggattgaggtgggc
cgtaaccacggcgtccgtcccggcaacatcatgggcgcgatcgccaacgaggccggcctg
gacagccgcttcatcggccgcatcaacatccacgacgatttcagcaccgtggaccttccc
gacggcatgccgcgggaagtgctgcgaaccctgaagaaagtgtgggtcgccggccgcccg
ctgaacatttccaaagcctag
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