Methylomarinovum caldicuralii: MIT9_P1620
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Entry
MIT9_P1620 CDS
T09494
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mcau
Methylomarinovum caldicuralii
Brite
KEGG Orthology (KO) [BR:
mcau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcau03019
]
MIT9_P1620
Enzymes [BR:
mcau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MIT9_P1620
Messenger RNA biogenesis [BR:
mcau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MIT9_P1620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
T2SSE
NACHT
ABC_tran
AAA_30
SLFN-g3_helicase
K-box
Motif
Other DBs
NCBI-ProteinID:
BCX82038
UniProt:
A0AAU9BT12
LinkDB
All DBs
Position
complement(1631448..1635314)
Genome browser
AA seq
1288 aa
AA seq
DB search
MNLDELQTQLERCQSRDRHRLARQLQRLKDLDPARLERLRRELEASVAATEARRSRIPPL
AYPELPVAAKKDDIAAALQEHQVVVVCGETGSGKTTQLPKICLEIGRGTRGMIGHTQPRR
IAARSVAARIAAELKTPLGALVGFKVRFSDHTRPETLVKLMTDGILLAETQSDRYLTQYD
ALIIDEAHERSLNIDFLLGYLKWLLPRRPDLKLIVTSATIDPQRFSEHFGGAPIIEVSGR
SYPVEVRYRPLAGEGESSDQDLIQAILEGVDELAAERLADILVFLTGERDIRDAAEALRK
HHPEKYEILPLYARLSAREQQKVFQPGGRPRIVLATNVAETSLTVPGIRAVIDSGLARIS
RYSPRSKLQRLPIEPVSQASARQRAGRCGRIAPGVCLRLYSEEDFLSRPAFTDPEIRRTN
LAAVILQMKALRLGDIETFPFIDPPDPRQIRAGIKLLQELQALDGKGELTAIGRQLIKFP
IDPRLARMLVAARDENCLTELTVIAAALSIQDPRERPADQAQAADEKHALWRDEKSDFLG
FLKLWNGYQQQRRHLSNTQLRKWCKAHFLSYLRMREWLDLHGQLLEIVKGELGWRPNQQP
AEYDAIHRAILSGLLSQIGFRRDKYEYEGVRGLKFFIFPGSGLFQTRPRWLVSAEQVETS
KVYARINAQVEPAWIEQCAGHLLKRHHYDPHWERKARRVAAFERVTLCGLTLVERRKVAY
EKIDPKKAREIFIAQALVQQDYDCNLDFFCHNRALLRELDLLQHKARQGDLLLDERWLYD
FYDRQIPARLANADDFERWYRRQVRNRPDLLKLDRDAVIRHLDGVDQADFPDHWEDGDLR
LALRYRFEPGHEADGVSVLVPVAVLPQLDARPFAWLVPGLLEENVVFILKGLPRSLRRRL
VPIPDTAWRVCRELQGRDGDFWAELSRALLRVTGVEVGADALKTVELPDHLQMNFQVLGE
RGRVLAQGRDLERLKTKLALSARETFARSDAGDLTRTGLKRWDFGPLPRSHKMRRKGQLV
IGFPALVDEGDSCAVRLFPTSGEARRAHRRGLIRMLQFQLGGDFRRLKKQLPFSTADEIA
YARLPAHPWRDTGPRRPLLDEVADRVIEEVFLGDDPDIRDAEALASCLAAHRSRLFETAQ
RLGTLVRDILQGLQACRRRRGELKHLEKSPSGADIDQQLTLLGYQGFVARIPMAQLQHLP
RYLKALQYRLDKAEYELAKDEARVAKIRPFWDAYWRQAEAGTIEDPDSDPFRWSLEEFRV
SLFAQQIKTAYPVSEKRLAKAWAEYQAA
NT seq
3867 nt
NT seq
+upstream
nt +downstream
nt
atgaatctcgacgaactgcagactcagctggaacgctgccagagccgggaccgccatcgg
ctggcgcgtcagttgcagcgcctgaaggatctggacccggcgcggctggaacgcttgcgc
cgggagctggaggcttccgtcgccgccaccgaggcccgccggtcccgcattccgccgctg
gcgtatcccgagctgccggtggcggccaagaaggacgacatcgccgccgcccttcaggaa
caccaggtggtcgtggtctgcggcgagaccggctcgggcaagaccacccagctgcccaag
atctgtctcgagatcggtcgcggcacccgcggcatgatcggccacacccagccgcgccgc
atcgccgcccgcagcgtcgccgcccgcatcgccgccgagctcaagaccccgctgggggcg
ctggtgggattcaaggtgcgcttttccgaccacacccggccggaaaccctggtcaagctg
atgaccgacggcatcctgctggcggaaacccaaagcgaccgctatctgacccagtacgac
gccctcatcatcgacgaggcccacgagcgcagcctcaacattgacttcctcctcggctac
ctcaagtggctgctgccgcggcggcccgatctcaagctcatcgtcacttccgctaccatc
gacccccagcgtttttccgagcacttcggcggggcgccgatcatcgaggtgtccgggcgc
agctatccggtcgaggtccgctaccgtcccctggcgggcgaaggggaaagcagcgaccag
gatctgatccaggcgattctggagggcgtcgacgaactggcggccgagcgcctggccgac
atcctggtgttcctcaccggcgagcgcgacatccgcgatgccgccgaggccctgcgcaag
caccatccggagaagtacgagatcctgcccctgtacgcccgcctcagcgcccgcgaacag
cagaaggtgttccaaccgggcggcaggccccggatcgtgctggccaccaacgtggcggaa
acctccctgacggtgcccggcatccgcgccgtcatcgattcgggcctggcgcgcatcagc
cgctacagtccccgcagcaagctccagcgcctgcccatcgaacccgtctcccaggcatcg
gcccggcagcgggctgggcgctgcggccgcatcgcccccggggtgtgcctgcggctgtat
tccgaagaggatttcctcagccgtccggccttcaccgatccggaaatccgccgcaccaac
ctggcggcggttatcctgcagatgaaggccctgcgcctgggggacattgagactttcccc
ttcatcgatccccccgaccccaggcagatccgcgccgggatcaaactgctgcaggaactc
caggctctggacgggaagggggaactgaccgccatcggccggcagctcatcaagttcccc
atcgacccgcggctggcgcggatgctggtggcggcccgggatgagaactgcctgaccgag
ctgaccgtcatcgccgccgccctcagcatccaggacccgcgcgagcggcccgccgaccag
gcccaggccgccgacgagaagcatgccctgtggcgcgacgagaagtccgactttctcggt
ttcctcaagctgtggaatgggtatcagcagcagcgccgccatctctccaacacccagctg
cgcaagtggtgcaaggcccatttcctgtcctatctgcgcatgcgcgagtggctcgacctc
cacggccagctgctggagatcgtcaagggggaactgggctggcgccccaaccagcagccg
gcggaatacgacgccatccaccgcgccatcctcagcggattgctgtcccagatcggcttc
cgccgcgacaagtacgagtacgagggggtgcgggggctgaagttcttcatcttccccggc
tccggcctgttccagacccgcccgcgctggctggtgtcggccgaacaggtggaaaccagc
aaggtgtacgcccgcatcaacgcccaggtggagccggcctggatcgagcagtgcgccggc
catctgctcaagcgccaccattacgatccccactgggagcgcaaggcccgccgggtggcg
gccttcgagcgcgtcaccctgtgcggcctcaccctggtggagcggcgcaaggtggcctac
gagaagatcgatcccaaaaaggcgcgggagatcttcatcgcccaggccctggtgcagcag
gactacgactgcaatctcgacttcttctgccacaaccgggccctgctgcgggaactggac
ctgctccagcacaaggcccgccagggggatctgctgctggacgagcgctggctctacgac
ttctacgaccgccagattccggcacgtctagccaatgccgacgatttcgaacgctggtac
cggcgccaggtccgcaaccgtccggacctgctcaagctcgaccgcgacgcggtgatccgc
catctcgacggcgtcgatcaggccgatttccccgaccactgggaagacggcgacctgcgt
ctggcgctgcgttaccgcttcgagccggggcacgaggccgacggcgtcagcgtcctggtg
ccggtggcggtgctgccccagctcgatgcgcggcccttcgcctggctggtgccggggctg
ctggaggaaaatgtggtctttatcctgaagggcctgccccgcagcctgcgccgccggctg
gtgccgattcccgataccgcctggcgggtctgccgggaactgcagggccgggacggggat
ttctgggccgagctatcgcgggcgctgctgcgggtcacgggggtcgaggtcggcgccgat
gccctcaagacggtggaactgcccgaccatctgcagatgaacttccaggtcctcggtgag
cgcggccgggtgctggctcaggggcgggatctggagcggctcaagaccaagctggcgctg
tcggcgcgggaaaccttcgcccgcagcgatgccggcgatctgacccgcaccggcctgaaa
cgctgggacttcggcccgctgccccggtcccacaagatgaggcggaagggccagctggta
atcggttttccggcgctggtggacgagggcgacagctgcgctgtgcgtctgtttcccacc
tcgggtgaggcgcgccgcgcccaccgccgcggcctgatccgcatgctccagttccagctc
ggcggcgatttccgccgtctcaaaaagcagctgcccttcagcaccgccgacgagatcgcc
tatgcccgcttgcctgcccatccctggcgcgacaccggcccccggcgcccgctgctggac
gaggtggccgaccgggtgatcgaggaggtattcctcggcgacgaccccgacatccgcgac
gccgaggccctggcatcctgtctggccgcccaccgcagccggctgttcgaaaccgcccag
cgcctggggacgctggtgcgcgacatcctccagggactgcaggcctgtcgccgccgccgc
ggcgaactgaagcatctggagaagtcccccagcggcgccgacatcgaccagcagctgacc
ctgttggggtaccagggcttcgtcgcccgcatcccgatggcgcagctgcaacacctgccg
cgctatctcaaggccttgcaataccggctcgacaaggcagaatacgaactggccaaggac
gaggcgcgggtggcgaagatccgccctttttgggacgcctactggcggcaggccgaggcc
ggcaccatcgaagacccggattccgaccccttccgctggagcctggaggagttccgggtg
tcgctgttcgcccagcagatcaagaccgcctatccggtgtcggaaaagcgtctggccaag
gcctgggcggaataccaggccgcctga
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