Methylomarinovum caldicuralii: MIT9_P2566
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Entry
MIT9_P2566 CDS
T09494
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mcau
Methylomarinovum caldicuralii
Pathway
mcau03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mcau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MIT9_P2566
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcau03400
]
MIT9_P2566
Enzymes [BR:
mcau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MIT9_P2566
DNA repair and recombination proteins [BR:
mcau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MIT9_P2566
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
AAA_22
AAA_30
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BCX82975
LinkDB
All DBs
Position
2632872..2636327
Genome browser
AA seq
1151 aa
AA seq
DB search
MTAETRNLHSWQHPPLPTAPGRALHWRGLHDAAPALALARAIAAHPSLFLVVTPDSHSAQ
RLEQELAFFLGKRAPVLHFPDWETLPYDVFSPLPEIVSERLRTLVRLPGTRHGVLVTPIA
TLMQRLAPQRHILGRGLSLETGDRLDLAALRERLEQAGYQCIPQVQQHGEFAVRGAILDL
FPMGSDRPLRIELFDDEIESIRTFDPETQRTIARTERFELFPAREFPTDSEAVKRFRRAF
RNAFPDLPAGNPLYQDVSSGFFPAGIEAYLPLFLETTATLFDYLPEDTTLVLATSPAKAA
NFFTEVEQRYQLRRGDLDRPPLPPETLYLPPEDLWRRFQAYPRIDLFPESEAADKVDFAT
APLPDVALEPQKKEPAARLQAFLAEHGGPVLFTAESPGRREALLDTLGRSGLRPESVEDW
ANFLARTPPLALTLAPLERGLWSEDPVLAVIPEARLYGERARQRRRDTARDIENLIADLS
ELTVGAPVVHRDHGVGRYLGLQRLEAGGVETEFLTLEYAGGDKLYVPVANLHLISRYSGA
DVENAPLHKLGGEQWKKARKKAQARVRDVAAELLEIHARRAARQGFAHQLDEAGYRAFAA
AFPFEETPDQSAAIEAVLADLRSPQPMDRVVCGDVGFGKTEVAMRAAFVAVQNGKQVAVL
VPTTLLAQQHYQNFRDRFADWPVRVEALSRFVTPTQQKQILRDVTDGKVDILIGTHKLLQ
KSVKYKNLGLVIIDEEQRFGVRQKEHFKKLRSEVDLLTLTATPIPRTLNMSLSGLRDISI
IASPPEGRHPIQTFVSEWVDGLVQEAILREIRRGGQVYFVHNKIESMARIAEEIGRLVPE
ARIRIAHGQMPERELERIMLDFYHQRFNVLLCTTIIESGIDVPSANTIIIHRADLFGLAQ
LHQLRGRVGRSHHRAYAYLLVPPKKLMTKDAVKRLEAIQASGELGAGFLISSHDLEIRGA
GELLGDEQSGQIQEIGFNLYTEMLEKAVKALREGRELSFEEEADSVEVDLKLPALIPDDY
VPDVHTRLVLYKRIANAETREALEALQVEMIDRFGLLPQAAKNLFAVAELKQQADRLGIT
KIDANAKGGRLQFTTEPSIDVEALLGLVQSRPQTYRLDGPQTLRFEENLEEPARRLAFVA
ELLAGLAPKSA
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgacggcagaaacccgcaacctccattcctggcaacatccacccctgcccaccgcgccc
ggacgcgcgctccactggcgcgggcttcacgacgccgccccggcgctggcgctggcccgg
gcgatcgccgcccatccgtccctgttcctggtggtcaccccggacagccacagcgcccag
cgcctggaacaggagctggccttcttcctcggcaagcgggcgccggtgctgcatttcccg
gactgggaaaccctgccctacgacgtcttctccccgctgccggagatcgtctccgaacgc
ctgcgcaccctggtgcggctgcccggaacccggcacggggtgctcgtcacccccatcgcc
accctgatgcagcgcctcgccccccaacgccacatcctcggccgcggcctctccctcgaa
accggcgaccgtctcgatctggccgccctgcgggaacggctggagcaggccggctaccag
tgcatcccccaggtacagcagcacggggaattcgccgtccgcggcgccatcctcgacctg
ttccccatgggcagcgacaggccgctgcggatcgaactgttcgatgacgaaatcgagtcc
atccgcaccttcgacccggaaacccagcgcaccatcgccagaaccgagcgcttcgaactg
ttcccggcgcgggaatttcccaccgacagcgaggcggtcaagcgcttccgccgtgccttc
cgcaacgcctttccggacctgcccgccggcaatccgctataccaggacgtcagcagcggt
ttcttccccgccggcatcgaggcctatctgcccctgtttctggaaaccacggcgaccctg
ttcgactatctgccggaggacaccaccctggtgctggccacttcgccggccaaggcggct
aacttcttcaccgaggtggagcagcgctatcagctgcgccgcggcgacctcgaccgcccg
cccctgcccccggagaccctctacctgccgccggaggacctgtggcgccgcttccaggcc
tatccccgcatcgacctgttccccgaatccgaggccgcggacaaggtggatttcgccacc
gccccgctgccggacgtggccctggagccgcagaagaaggaaccggccgcccgcctccag
gcattcctggccgaacacggcggtccggtgctgttcaccgccgaaagccccggccgccgc
gaggccctgctcgacaccctgggacgatccggcctgcgcccggaaagcgtggaggactgg
gccaacttcctggcccgcaccccgcccctggccctgaccctcgcccccctggaacgcggg
ttgtggagcgaggacccggtgctggcggtcattcccgaagccaggctctacggagagcgc
gcccgccagcggcggcgggatacggcccgcgacatcgagaacctgatcgccgatctgagc
gagctgaccgtcggcgcgccggtggtccaccgcgaccacggcgtcggccgctacctggga
ctgcagcggctggaggcaggcggggtggaaaccgaatttttgaccctggaatacgccggc
ggcgacaagctctacgtgccggtggccaacctccacctcatcagccgatacagcggcgcc
gacgtggaaaacgcccccctgcacaagctgggcggcgaacaatggaaaaaggcccgcaaa
aaggcccaggcgcgggtccgcgacgtggccgccgaactgctggagatccacgcccggcgg
gccgcccgccaggggttcgcccatcagctggacgaggccggttaccgcgccttcgccgcc
gccttccccttcgaggaaaccccggaccagagcgccgccatcgaggcggtgctcgccgac
cttagatccccccagcccatggaccgggtggtgtgcggcgacgtcggcttcggcaagact
gaggtggccatgcgcgccgccttcgtcgcagtccagaacggcaaacaggtggcggtgctg
gtgcccaccaccctgctggcccagcagcactatcagaacttccgcgaccgcttcgccgac
tggccggtgcgggtggaggcgctgtcgcgcttcgtcacccccacgcagcagaagcagatc
cttcgtgacgtgaccgacggcaaggtggacatcctcatcggcacccacaagctgctgcag
aaaagcgtcaaatacaaaaacctggggctggtcatcattgacgaggagcagcgcttcggg
gtgcgccagaaggagcacttcaaaaagctgcgcagcgaagtggacctgctcaccctaacc
gccacccccattccccgcactctcaacatgtccctgtcgggcctcagggacatttccatc
atcgccagcccgccggaagggcggcatcccatccagactttcgtcagcgaatgggtggac
ggcctggtgcaggaggcgatcctgcgcgagatccgccgtggcggccaggtctatttcgtc
cacaacaagatcgaatccatggcgcgcatcgccgaggagatcggccgcctggtgcccgag
gcccgcatccgcatcgcccacggccagatgcccgaacgcgagttggaacggatcatgctt
gacttctaccaccagcgcttcaacgtgctgctgtgcaccaccatcatcgagagcggcatc
gacgtgccctcggccaacaccatcatcatccaccgcgccgacctgttcggcctggcccag
ctgcaccagctgcgcgggcgggtgggccgctcccaccaccgcgcctacgcctacctgctg
gtgccgcccaagaagctgatgaccaaagacgccgtcaagcgcctggaggcgatccaggcc
tccggggagctgggcgccggcttcctgatctcctcccacgacctggagatccgcggcgcc
ggcgagctgctcggcgacgagcagagcggccagatccaggagatcggcttcaatctctac
accgaaatgctggaaaaggcggtcaaggccctcagggaaggccgggaactgagctttgag
gaagaagccgacagcgtcgaggtggacctgaaactcccggccctgatccccgacgactac
gttcccgacgtccacacccgcctggtgctgtacaaacgcatcgccaacgctgaaacccgc
gaagccctggaagcactgcaggtggaaatgatcgaccgtttcggcctgctgccgcaggcg
gctaagaatctgttcgccgtcgccgagctcaagcaacaggccgatcgcttagggattacc
aagatcgacgccaacgccaaaggcggccgcctccagttcaccaccgaacccagcatcgac
gtggaggcgctgctgggtctggtgcagtcccggccgcaaacctaccgcctcgacggcccc
cagaccctgcgctttgaggaaaacctggaggaaccggcccggcgcctggccttcgtcgcc
gaactcctggcgggactggcgccgaaaagcgcgtga
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