Microbacterium caowuchunii: F6J84_02030
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Entry
F6J84_02030 CDS
T07216
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mcaw
Microbacterium caowuchunii
Pathway
mcaw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mcaw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
F6J84_02030 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcaw03021
]
F6J84_02030 (rpoC)
03400 DNA repair and recombination proteins [BR:
mcaw03400
]
F6J84_02030 (rpoC)
Enzymes [BR:
mcaw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
F6J84_02030 (rpoC)
Transcription machinery [BR:
mcaw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
F6J84_02030 (rpoC)
DNA repair and recombination proteins [BR:
mcaw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
F6J84_02030 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
GemA
Motif
Other DBs
NCBI-ProteinID:
QEV99012
LinkDB
All DBs
Position
441878..445753
Genome browser
AA seq
1291 aa
AA seq
DB search
MLESTTFDQLRIGLATADDIRRWSFGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
ACGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVISVDEEARHRDLPTHENNLRLEIKNIADRRDARVATRMAKLEEE
LAALEAEGAKADQKKKVKDLAEKEMSSIRKNADEQLNKLERVWEEFRNLEVGALKPEDEV
FNELVDRFGQYFEAHMGAESIKRRLEAFDLAAEAESLHLQISEGKGQRKIRAIKRLKVVN
SFLTTGMSPASMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLGHSQNIKAAKRAVERTR
PEVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTLPSQDMIIGLHHLTTVKEGATGEGR
VFGSVGEAILAKDEGTLDLQAKVRIRIRGLSFLEGEAPEGYERHGLVDASLGQAIFNDTL
PKGYPFVREQADKGKLSQIVNKLAEEYPKVEVAASLDRIKDAGFYWATRSGVTVALSDVL
TPPNKAEIIAGYEKQAAKVQSQYEKGLTTDAERRQELIKIWTAATDEVQVAMKAHFPADN
TINRMVSSGARGNWLQIRNIAGMRGLVNNPKGEIIARPIISSYREGLSVAEYFIATHGAR
KGLADTALRTADSGYLTRRLVDVSQDVIIREEDCATSKGLELPIAAAGADGVLVKDANVE
NSVFARTLAADVVDASGTVLAEAGSDVGDVLINRLVESGVTSIKVRSVLTCDSAVGVCAK
CYGRSLATGKVVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASAEDITQGLPRVQELF
EARTPKGASPIAEADGRITIDETDKAKKVILTPDNGDEPHVYPVLKRATLLVEDGQHVEV
GQPILVGTLDPKEIMRVMGAREVQRYLVGGVQGVYRSQGVPIHDKHIEVIVRQMLRKVTV
VDHGDTKLLPGELVDSRRFIDINRQTVGEGKRPASGRPELMGITKASLATESWLSAASFQ
ETTRVLTQAAMEGKSDPLVGLKENVIIGKLIPAGTGLAKYRNVTVEATEEAKSERYPNRI
FASDGAYSDTDLSYVDFDSFSTDDFTPGTYN
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgaatcaaccactttcgatcagcttcgcatcggcctggccactgccgacgacatc
cgtcgttggtccttcggcgaggtcaagaagcccgagaccatcaactaccgcacgctgaag
ccggagaaggacggtctcttcggagagcagatcttcggaccttcgcgtgactgggagtgc
gcctgcggcaagtacaagcgggtccgcttcaagggaatcgtctgcgagcgctgcggcgtg
gaggtcaccaagtcctccgtgcgtcgtgagcgcatgggccacatcgagctcgccgcaccc
gtcacccacatctggtacttcaagggcgtgccctcgcgcctcgggtacctgctcgacatg
gcgccgaaggacctcgagaaggtcatctacttcgccgcctacatggtgatctcggtcgac
gaggaggcgcgtcaccgcgacctccccacgcacgagaacaacctgcgcctcgagatcaag
aacatcgccgaccgccgtgacgcccgcgtcgcgacgcgcatggcgaaactggaggaggag
ctggccgccctggaggcggaaggcgccaaggccgaccagaagaagaaggtcaaggacctc
gccgagaaggagatgtcctccatccgcaagaacgcggacgagcagctcaacaagctcgag
cgcgtgtgggaggagttccgcaacctcgaggtcggcgccctcaagcccgaggacgaggtc
ttcaacgagctcgtcgaccggttcggtcagtacttcgaggcccacatgggtgcggagtcg
atcaagcgtcgcctcgaggccttcgatctcgcggccgaagccgagagcctgcacctgcag
atctcggagggcaagggccagcgcaagatccgtgcgatcaagcgcctgaaggtcgtcaac
tccttcctgacgacgggcatgagcccggcgtccatggtgctcgacgtcgtcccggtgatc
ccgccggagctgcgcccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgtcgcgtgatcaaccgcaacaaccgcctccgtcgtctgctcgacctc
ggtgcccccgagatcatcgtgaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggtcgtcccgtcacgggcacgggtaaccgtgcgctgaag
tccctgagcgacatgctcaagggcaagcagggccggttccgtcagaacctgctcggcaag
cgcgtggactactcgggccgttcggtcatcatcgtcggtccgcagctgaagctgcaccag
tgcggtctgcccaagcagatggccctggagctgttcaagccgttcgtgatcaagcgcctg
atcgacctcggtcactcgcagaacatcaaggccgcgaagcgtgccgtcgagcgcacgcgt
cccgaggtctgggacgtgctcgaggagatcatccgcgagcgtcccgtgctgctcaaccgt
gcgcccacgctgcaccgtctcggtatccaggcgttcgagccgcagctcgtggagggcaag
gccatccagctgcacccgctcgtctgcgccgccttcaacgcggacttcgacggtgaccag
atggccgtccacctcccgctgtcggtcgaggcccaggccgaggcgcgcatcctgatgctc
gcctcgaacaacatcctgaagccgtcggacggtcgcccggtcaccctgccttcgcaggac
atgatcatcggcctgcaccacctgaccacggtcaaggagggcgccaccggtgagggacgc
gtcttcggttccgtcggcgaggccatcctcgccaaggacgagggcacgctcgacctgcag
gcgaaggtccggatccgcatccggggtctgtccttcctcgagggcgaggcccccgagggt
tacgagcgccacggcctcgtggacgcctcgctcggccaggcgatcttcaacgacaccctg
cccaagggctacccgttcgtccgcgagcaggcggacaagggcaagctgtcgcagatcgtg
aacaagctcgccgaggagtacccgaaggtggaggtcgcggcctccctcgaccggatcaag
gacgccggcttctactgggccacgcgttcgggtgtgaccgtcgccctgagcgacgtgctc
accccgccgaacaaggccgagatcatcgcgggctacgagaagcaggccgcgaaggtccag
tcccagtacgagaagggcctcacgaccgacgccgagcgtcgtcaggagctcatcaagatc
tggacggcggcgaccgacgaggtccaggtggccatgaaggcgcacttcccggccgacaac
acgatcaaccgcatggtgtcctcgggcgcccgtggtaactggctgcagatccggaacatc
gccggtatgcgaggcctggtgaacaacccgaagggtgagatcatcgcccgtccgatcatc
tcctcgtaccgcgaggggctgtcggtggcggagtacttcatcgcgacgcacggtgcccgt
aagggtctggccgacacggccctccgtacggccgactcgggttacctcacgcgtcgtctc
gtggacgtctcgcaggatgtcatcatccgcgaggaggactgcgcgacctcgaagggtctc
gagctgcccatcgccgccgcgggtgcggacggcgtgctggtcaaggacgcgaacgtcgag
aactcggtgttcgcccgtaccctggccgcggacgtcgtggacgcttccggcacggtgctc
gccgaggcgggttccgacgtcggcgacgtgctcatcaaccgcctggtcgagtccggcgtc
acctccatcaaggtgcgctcggtcctgacctgcgactcggccgtcggcgtctgcgcgaag
tgctacggccgttcgctcgccaccggcaaggtcgtcgacatcggtgaggccgtcggcatc
atcgcggcgcagtcgatcggtgagcccggtacccagctgacgatgcgtaccttccacacg
ggtggttcggcatcggccgaggacatcacgcagggtctgccgcgtgtccaggagctgttc
gaggcgcgtacccccaagggtgcgtccccgatcgccgaggcggacggtcgcatcacgatc
gatgagaccgacaaggccaagaaggtcatcctcacgcccgacaacggcgacgagccgcac
gtctacccggtgctcaagcgcgccacgctcctcgtcgaggacgggcagcacgtcgaggtc
ggccagccgatcctcgtcggcacgctcgacccgaaggagatcatgcgcgtcatgggcgcc
cgcgaggtgcagaggtacctcgtcggcggcgtgcagggcgtgtaccggtcgcagggtgtg
ccgatccacgacaagcacatcgaggtcatcgtgcgccagatgctgcggaaggtcaccgtg
gtcgaccacggcgacacgaagctgctgcccggtgagctcgtcgactcgcgtcgcttcatc
gacatcaaccgccagacggtcggcgagggcaagcgtcccgcgtcgggccgtccggagctg
atgggtatcacgaaggcgtcgctcgcgaccgagtcgtggctgtcggccgcctccttccag
gagacgacccgcgtgctcacgcaggccgcgatggagggcaagagcgacccgctcgtgggc
ctgaaggagaacgtcatcatcggaaagctgatcccggccggaaccggacttgcgaagtac
cgcaacgtcacggtcgaggcgacggaggaggccaagagcgagcggtaccccaaccgcatc
ttcgcgtccgacggtgcgtacagcgacaccgacctgagctacgtcgacttcgacagcttc
tcgacggacgacttcacgcccggaacgtacaactga
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