Microbacterium caowuchunii: F6J84_04810
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Entry
F6J84_04810 CDS
T07216
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mcaw
Microbacterium caowuchunii
Brite
KEGG Orthology (KO) [BR:
mcaw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcaw03019
]
F6J84_04810 (hrpA)
Enzymes [BR:
mcaw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
F6J84_04810 (hrpA)
Messenger RNA biogenesis [BR:
mcaw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
F6J84_04810 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
T2SSE
nSTAND_NTPase5
nSTAND3
ResIII
NACHT
AAA_30
SRP54
UvrD-helicase
WHD_HA2
FtsK_SpoIIIE
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
QEV99498
LinkDB
All DBs
Position
complement(1013722..1017678)
Genome browser
AA seq
1318 aa
AA seq
DB search
MSTPEPVISFPPELPVSAARDEIARAIADNQVVIVAGATGSGKTTQLPKICLQLGRTRIA
HTQPRRIAARTIAERVASELQVPLGGVVGYKVRFTDKVSADTRVALVTDGILLNEIHRDR
LLRRYDTIIIDEAHERSLNVDFLLGYLRRILPERPDLKIIVTSATIDPESFARHFADAAG
RPAPVIEVSGRTYPVEIRYRPLVDDTSLGEDEDEDTDEDDDHRPARPPARAPKQTAARTA
PGADEDEVSAIVGALRELDREAPGDVLVFLPGEAEIRDAMDAVRGAYAKDASPTEVLPLY
GRLSAAEQHRVFERSTVAGVRRRVILATNVAETSLTVPGIRYVVDVGTARISRYSNRSKI
QRLPIEAISQASAQQRSGRAGRTAPGIAIRLFSEEDFERRPEFTEPEILRTSLASVILQM
LSLGFGDISAFPFLTPPDSRGVQAAFDLLVEIGAVRRTRQGTTLTAIGREISRLPIDPRF
ARMLIAARDGGVLPSVLAIVAGLSIQDVRERPEDRREEADRQHARFTDPTSDFLTLLNLW
NHLREQQAELGSSAFRRLCRSEFLNYVRVREWFDVHRQLAQQLGVPRAQTETDQTADPDA
VHRAILAGLLSHIGILDEREKPRDGRPAKPEYRGARGARFALFPGSGLRKKRPQAVMAAE
LVETSRLFARTAAAIDPAWAEPLAGDLAKRQLSDPHWSKDAGAAVAAEKVTLFGVEIIPR
RRVQLARFDRPLAREMFLRHALVEQEWDPTVLPKPLTAFSRRNEELRRRLEKVEERERRR
DILAGDEAVYAFYDGRIPADVFDLRSFEAWWKDASTRTPRLLDLTEDDLVDGNTRADERD
FPTRWTQGDQVLSLAYRFEPGAPDDGVTVVIPMALLAQVRPDGFDWQVPGLRDELITALI
RALPKAIRRHVVPAGDWAVRFAEELAGAGPENHDGLPREDLVTALAARIQRVANQPVTAA
DFELDRVPTHLRMSFRAVDERGRAAGSDRDLGALQARFADRARSSVARSLTRPRGLEPRA
VATASAAAPVAERSGLTDWTVGELPERVDSKVAGGIVRGYPALVDEGASVALRLEATPEA
AARATRGGVRRLVLLAVPSPTSYVLDHLTATEKLALATSPYPNAKALVEDARVAVADAVI
AGIVPDGIVRDRAGFERLRDAFSAAVTDELFRATSLTARILIALREVDRSMKKQNSLTLL
GALGDVRAQLAGLVFPGFVSRTGLARLAHYPRYLQAAKERLDALADQPGKDRARMTEFER
VAAAYAEAGGTIPTGPDDPETLVHARWLLEELRVSLFAQRLGTAEPVSPQRIAKVLRG
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
gtgtccacgccagaacccgtgatctccttcccgcccgagctgcccgtcagcgccgcgcgg
gacgagatcgcgcgcgcgatcgccgacaaccaggtcgtcatcgtggcgggggccaccggc
tcgggcaagaccacccagctgccgaagatctgccttcagctcggacgtaccaggatcgcg
cacacccagccgcgccggatcgccgcccgcacgatcgccgaacgcgtggcgagcgagctg
caggtgccgctcggcggcgtcgtcggatacaaggtgcgcttcaccgacaaggtctccgcc
gacacccgggtcgccctggtcacggacggcatcctgctcaacgagatccaccgcgaccgg
ctgctccgccgctacgacacgatcatcatcgacgaggcccacgaacgatcactgaacgtc
gacttcctgctcggctacctgcgccgcatcctgcccgagcgccccgacctcaagatcatc
gtcacctcggccacgatcgatccggagagcttcgcccgccacttcgccgatgccgccggc
cgacccgcgccggtcatcgaggtctccggccgcacctacccggtggagatccgctaccgc
ccgctcgtcgacgacacgtcactcggcgaggacgaggacgaggacacggacgaagacgac
gaccaccggcccgcccgcccgccggcccgtgcaccgaagcagacggctgcgcggaccgca
cccggagccgacgaggacgaggtctccgcgatcgtgggggcactccgcgaactcgaccgg
gaggcgcccggcgatgtcctggtgttcctgccgggcgaggcggagatccgcgacgcgatg
gacgcggtgcgcggcgcgtacgcgaaggacgcctcccccaccgaggtgctccccctgtac
ggtcggctctccgccgccgagcagcaccgcgtcttcgagcggtccacggtcgccggggtg
cggcggcgggtcatcctcgcgacgaacgtggccgagacgagcctcaccgtccccggcatc
cggtacgtggtggacgtgggaacggcgcgcatctcgcgctacagcaaccggtccaagatc
cagcggctgccgatcgaggcgatctcgcaggcctccgcccagcaacgctccggccgcgcc
ggccgcaccgcgcccggcatcgcgatccggctcttctccgaggaggacttcgagcgccgg
ccggagttcaccgaaccggagatcctgcgcacgtcgctggcctccgtcatcctgcagatg
ctctcgctcgggttcggcgacatctcggcgttccccttcctcaccccaccggattcccgc
ggcgtccaggcggccttcgacctgctggtcgagatcggtgcggtccgccgcacgcgtcag
ggcacgacgctcaccgcgatcggccgggagatctcgcggctccccatcgatccgcggttc
gcccggatgctgatcgccgcgcgggacggcggtgtgctcccgagcgtcctggccatcgtg
gcgggactgtccatccaggacgtccgggaacgccccgaggaccggcgcgaggaggccgac
cggcagcatgcgcggttcaccgatccgaccagcgacttcctcaccctgctgaacctctgg
aaccacctgcgcgagcagcaggccgaactgggttcgagcgccttccggaggctctgtcgc
agcgagttcctcaactacgtgcgggtgcgcgagtggttcgatgtgcaccgccagctcgcg
cagcagctgggcgtcccccgggcgcagaccgagaccgaccagacggccgatccggatgcg
gtgcaccgcgccatcctcgccggcctcctctcgcacatcggcatcctggacgaacgcgag
aagccccgggacggccgtcccgccaagcccgagtaccggggcgcgcgcggggcgcggttc
gcgctgttcccgggatcgggcctgcgcaagaagcgtccgcaggcggtgatggcggccgag
ctggtcgagaccagccgcctcttcgcccgaaccgccgccgcgatcgacccggcctgggcg
gagccgctcgccggggacctcgccaagcggcagctcagcgatccgcactggtccaaggac
gccggggcggccgtcgccgcggagaaggtgaccctgttcggggtcgagatcatccctcgg
cgccgggtgcagctggcccggttcgaccgtccgctcgcccgcgagatgttcctccggcac
gccctggtcgagcaggagtgggatccgaccgtgctgccgaagccgctcaccgcgttctcg
cgacggaacgaggagctgcgccgccggctggagaaagtggaggaacgcgagcgtcggcgc
gacatcctcgccggtgacgaagccgtctacgcgttctacgacggccgcatccccgccgat
gtcttcgacctgcgctcgttcgaggcgtggtggaaggacgcctcgacgcgcaccccgcgg
ctcctggatctcaccgaggacgacctggtcgacgggaacacccgcgccgacgagcgggac
ttccccacccgctggacccagggtgatcaggtgctgtcgctggcgtaccgcttcgagccc
ggcgcgcccgacgacggagtcaccgtcgtcatccccatggcactgctggcgcaggtgcgc
ccggacggtttcgactggcaggtgccgggcctccgggacgagctcatcaccgccctcatc
cgcgcgctgccgaaggcgatccgccggcacgtcgtccccgccggggactgggcggtgcgg
ttcgcggaggaactggccggagccggtccggagaaccacgacggactcccccgcgaggac
ctcgtgaccgccctcgcggcgcgtatccagcgcgtggcgaaccagccggtcacggccgcg
gatttcgagctggaccgggtccccacccacctgcggatgtctttccgcgcggtcgacgaa
cgcggccgggcggccggctccgaccgggacctcggtgctctccaggcacgcttcgccgac
cgtgcgcgcagctccgtcgcccggtccctcacccgcccgcgcggtctcgagccccgcgcg
gtcgccacggcatcggccgccgctccggtggcggagcggagcggtctcaccgactggacc
gtgggcgagctccccgagcgggtggactccaaggtcgccggcggcatcgtccgcggttat
cccgccctggtcgacgagggcgcgagcgtggcactccgcctggaggcgaccccggaagcg
gcggctcgcgccacgcgaggcggcgtccgccggctggtgctgctggccgtcccgtcgccc
acctcgtacgtgctcgaccacttgaccgcgaccgagaagctggcgctggccacgtcgccg
tacccgaacgccaaggcgctcgtcgaggacgctcgcgtggcggtggcggatgccgtcatc
gccggtatcgtcccggacgggatcgtgcgtgaccgggccggcttcgaacggctccgtgac
gcgttctcggccgccgtgaccgacgagctgttccgtgcgacctccctcaccgcccgcatc
ctgatcgccctgcgcgaggtggatcgctcgatgaagaagcagaactccctcaccctgctc
ggcgcgctcggcgacgtgcgcgcgcagctggcggggctcgtgttccccggcttcgtctcc
cgcaccggcctcgcccggctcgcgcactacccgcggtacctccaggccgccaaggaacgc
ctcgacgctctcgcggaccagcccgggaaggaccgcgcgcggatgaccgagttcgagcgc
gtggcagcggcgtacgccgaggcaggcgggacgatcccgaccggtcccgacgatccggag
accctcgtgcacgcgcgctggctgctggaggagttgcgcgtgagcctgttcgcgcagcgt
ctgggcacggccgagccggtctcgccgcaacgcatcgccaaggtgttgcgcggatga
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