Micromonospora cathayae: PVK37_10935
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Entry
PVK37_10935 CDS
T10286
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mcay Micromonospora cathayae
Pathway
mcay03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mcay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PVK37_10935 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcay03400
]
PVK37_10935 (mfd)
Enzymes [BR:
mcay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PVK37_10935 (mfd)
DNA repair and recombination proteins [BR:
mcay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PVK37_10935 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
WDZ86866
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All DBs
Position
2361580..2365254
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AA seq
1224 aa
AA seq
DB search
MLTGIFSAALADPGLTRARDLARSGAAQVDGLDLTAPAALRPFAVAAVAADTTAGGAGRP
VLAVTATTREADDLAAALGSLLPPGQVAVFPSWETLPHERLSPRSDTVGRRLAVLRRLAH
PDAVDTHGRSGPLRVVVAPVRSLLQPQLKGLGDLEPVQLAPGGEADLEGVARRLTDLAYA
RVDLVTKRGEFAVRGGILDVFPPTDEHPSRVEFWGDEVEEIRTFAVADQRTIEAAPRLWA
PPCRELLLTPGVRRRAAALAAEHPELAEILDKLAEGIPVEGMESLAPVLVGPESMELLLH
TMPAGTHVLLCDPERIRTRAHDLVRTSDEFLQASWAAAAVGGRAPVDVGAAAFRTLAEVR
AAAGTLRQPWWTLSPFGLVEAERGVPQRQPWEDEPTRADVTPDDAIAVTLTAQPAPLYHG
ETPRLVDDLKRWAGDGWAVALVFEGHGPAQRAVEVLRDAGLGARLVDEVPAAPTPGELLV
SCGALTQGFVDEASRFVLLTGNDVTGGRGTSTRDMRKLPSRRRNTIDPLELKAGDHVVHE
QHGIGRYVELVQRTVNGASREYLVIEYAPSKRGQPGDRLFVPTDQLDQLSRYVGGEQPAL
HKMGGADWQKSKARARKAVKEIAAQLIQLYAARKASKGHAFAPDTPWQRELEDAFPWQET
PDQLAAIEEVKRDMEQTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLA
QQHYNTFAERMSQFPIEIRQLSRFQTAKEAERTLEMVAEGTVDIVIGTHRLLAASTRFKS
LGMVIVDEEQRFGVEHKEHLKSLRASVDVLSMSATPIPRTLEMAITGIREMSTIATPPEE
RHPVLTFVGAYDERQVAASIHRELLRDGQVFYLHNRVESIDRTARKIREMVPEARVAVAH
GQMGEDALEKVMVGFWEKEFDVLVCTTIVESGIDIPNANTLIVERADLLGLAQLHQIRGR
VGRGRERAYAYFLYPPEKPLTEHAHERLATIAQHTELGAGMYVAMKDLEIRGAGNLLGGE
QSGHIEGVGFDLYVRMVGEAVQQFKGERPEEETDVKIDLPVDAHLPHDYVGVERLRLEMY
RKLAEARDEQRLREVVAEMTDRYGEPPAPVQNLVAVARFRLLARRYGLTDVSMQGKHLRF
SPLPLPDSKQLRLKRYHPDSVYKQALDQVSVPRPSTRRIGGEPLRDQALLDWCAQLLSDV
LGPPTPPPATGPAPSAAGSAGPAR
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgctcaccggaatcttctccgccgccctggccgaccccgggctgacccgggcccgtgac
ctggcgcgctccggtgccgcacaggtcgacgggctcgacctgaccgccccggcggcactg
cgtccgttcgcggtcgccgccgtcgccgccgacaccacggccggcggtgcgggccgcccg
gtgctcgccgtcaccgccaccacccgcgaggccgacgacctggccgccgcgctgggcagc
ctgctcccgcccgggcaggtggcggtcttcccgtcctgggagacgctgccgcacgagcgg
ctctcgccccgctccgacaccgtgggccggcggctggccgtgctgcgtcggctggcccac
ccggacgcggtggacacccacggccgcagcgggccgctgcgggtggtggtcgcgccggta
cggtcgctgctgcaaccgcagctcaaggggctcggcgacctggagccggtgcagctcgcc
cccggcggcgaggcggacctggagggcgtcgcccgccggctgaccgacctggcgtacgcg
cgggtcgacctggtcaccaagcggggcgagttcgcggtacgcggcggcatcctcgacgtg
ttcccgccgaccgacgagcacccgtcccgggtcgagttctggggcgacgaggtggaggag
atccgtaccttcgccgtcgccgaccagcgcaccatcgaggcggccccccggctgtgggcg
ccgccgtgccgggaactgctgctcaccccgggggtacgtcggcgggccgccgcgctggcc
gccgagcacccggagctggccgagatcctcgacaaactggccgagggcatcccggtagag
gggatggagtcgctcgccccggtgctggtcggcccggagtcgatggagctgctgctgcac
accatgccggccggcacccacgtgctgctgtgcgacccggagcggatccgcacccgggcg
cacgacctggtccgtacctcggacgagttcctccaggcgagctgggcggcggcggccgtg
ggcggccgggccccggtcgacgtcggggccgccgccttcaggacgctggccgaggtacgc
gccgccgccggcacgctgcgccagccgtggtggacgctgtcgccgttcggcctggtcgag
gccgagaggggcgtaccgcagcggcagccctgggaggacgagccgaccagggccgacgtc
accccggacgacgcgatcgcggtgaccctgaccgcccagccggccccgctgtaccacggc
gagaccccgcggctggtggacgacctgaagcgctgggccggtgacggctgggcggtggcg
ctggtcttcgaggggcacggtcccgcccagcgggccgtcgaggtgctccgcgacgccggc
ctgggcgcccggctggtggacgaggtcccggccgccccgacgccgggcgagttgctggtg
agctgcggcgcgctgacccaggggttcgtcgacgaggcgtcccggttcgtgctgctcacc
ggcaacgacgtcaccggcggtcggggcacctccacccgggacatgcgcaagctgcccagc
cggcggcgcaacaccatcgacccgctggagctgaaggccggcgaccacgtcgtgcacgag
cagcacggcatcggccggtacgtggagctggtgcagcgcaccgtcaacggcgcgtcccgg
gagtacctggtcatcgagtacgcccccagcaagcgcggccagcccggtgaccggctgttc
gtccccaccgaccagctcgaccagctctcccggtacgtgggcggggagcagccggcgctg
cacaagatgggcggcgcggactggcagaagtccaaggcacgggcccgcaaggcggtcaag
gagatcgccgcccagctcatccagctctacgccgcccggaaggcgtcgaaggggcacgcg
ttcgccccggacaccccctggcagcgggagctggaggacgccttcccctggcaggagacc
cccgatcagctcgccgcgatcgaggaggtcaagcgggacatggagcagaccgtcccgatg
gaccggctgatctgcggtgacgtcgggtacggcaagaccgagatcgcggtccgggcggcg
ttcaaggcggtgcaggacggcaagcaggtggccgtgctggtgccgacgacgctgctggcc
cagcagcactacaacacgttcgccgagcggatgagccagttcccgatcgagatccggcag
ctgtcccggttccagacggcgaaggaggccgagcggaccctggagatggtcgccgagggc
accgtcgacatcgtcatcggcacccaccggctgctggcggcgtcgacccggttcaagtcg
ctcggcatggtgatcgtggacgaggagcagcggttcggcgtcgaacacaaggagcacctg
aagagcctgcgcgcctcggtggacgtgctgagcatgtcggccaccccgatcccgcgcacc
ctggagatggcgatcaccggtatccgggagatgtccaccatcgccaccccgccggaggag
cggcacccggtgctgaccttcgtcggggcgtacgacgagcggcaggtggccgcgtcgatc
caccgtgagctgctccgcgacggtcaggtcttctacctgcacaaccgggtcgagtcgatc
gacaggacggcgcggaagatccgggagatggtgccggaggcgcgggtcgccgtggcgcac
gggcagatgggcgaggacgccctggagaaggtcatggtcggcttctgggagaaggagttc
gacgtcctggtctgcaccacgatcgtggagtcgggcatcgacatcccgaacgcgaacacg
ctgatcgtggagcgggccgacctgctcgggctggcccagctgcaccagatccggggccgg
gtcggccggggccgggagcgggcgtacgcgtacttcctctacccgccggagaagccgctc
accgagcacgcgcacgagcggctggccaccatcgcccagcacaccgagctgggcgcgggc
atgtacgtggcgatgaaggacctggagatccggggggccggcaacctgctcggcggtgag
cagtccgggcacatcgaaggcgtcggtttcgacctttacgtccggatggtcggtgaggcg
gtgcagcagttcaagggcgagcgccccgaggaggagaccgacgtcaagatcgacctcccg
gtggacgcgcacctgccgcacgactacgtcggcgtggagcggctgcgcctggagatgtac
cgcaagctcgccgaggcccgcgacgagcagcggctgcgcgaggtggtcgccgagatgacc
gaccggtacggcgaaccccccgccccggtgcagaacctggtcgcggtggcccggttccgc
ctgctggcccgccgctacggcctgaccgacgtgtcgatgcagggcaagcacctgcggttc
agcccactgccgctgcccgactccaagcagttgcggctcaagcgctaccaccccgactcg
gtctacaagcaggccctggaccaggtcagcgtcccccggccgagcacccgccggatcggc
ggcgagccgctgcgcgaccaggccctgctggactggtgcgcccaactcctgtccgacgtc
ctcggcccccccaccccaccccccgccaccggcccggccccctctgccgccggctccgcc
ggcccggcgcgttga
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