Micromonospora cathayae: PVK37_16460
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Entry
PVK37_16460 CDS
T10286
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mcay Micromonospora cathayae
Brite
Enzymes [BR:
mcay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PVK37_16460 (hrpA)
Messenger RNA biogenesis [BR:
mcay03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PVK37_16460 (hrpA)
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GFIT
Other DBs
NCBI-ProteinID:
WDZ88078
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Position
complement(3577411..3581472)
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AA seq
1353 aa
AA seq
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MHRRTTDLMFRDQRRIQRRLDGVRRLRDPDRRDAALAGIAADVAAAEARLAARRAAVPKV
TYPAGLPVSERAEDIAAVIRDHQVVIVAGETGSGKTTQLPKICLELGRGVQGLIGHTQPR
RLAARTVADRIAEELGTELGDVVGYKVRFTDQVGDRSLVKLMTDGILLAELQTDRMLRQY
DTLIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIETDRFAKHFAGPPTEDAPD
GKPAPVVEVSGRTYPVEVRYRPLVEVSEADEDDGADEENVRDQIQAIGDAVEELAAEGPG
DVLVFLSGEREIRDTADALGKLVQKKRSLLGTEILPLYARLSAAEQHRVFAPHTGRRVVL
ATNVAETSLTVPGIKYVVDPGTARISRYSSRLKVQRLPIEPVSQASANQRKGRCGRTSDG
ICIRLYDEQDFASRPEFTDPEILRTNLASVILQMTSIGLGDVAAFPFIDPPDRRNIADGV
NLLHELGALDPTETDPAKRLTPLGRRLAQLPVDPRLARMVVEGERNGCATEVVVIAAALS
IQDPRERPVEKQAQADQAHARFTDAESDFVTFLNLWRYLREQQRALSSSAFRRMCKAEYL
NYLRVREWQDIVSQVRQVLRTPAEGGRERGRRDTPTETGRRDASTDAGRRDGEPAGGGRR
DRGAELPEEIDTPKVHQSLLPGLLSHVGWKDPQKHEYLGARGAKFALFPGSALFKKPPRW
VMAAELVETSRLWGRVAGRVEPEWIEPLAQHLVKRSYSEPHWEKKQAAVLAYEKVTLYGL
PLVTARKVNFGRIDPGLSRELFIRHALVEGDWSTHHQFWRDNQKLRDDVEELEHRARRRD
ILVDDETIFQFYDERIPADVVSGRHFDAWWKTERRHRPDLLTFTRELLVNAGRGGVDEAD
YPDRWHSDGVALPLTYRFEPGTPTDGVTVDIPLPLLNQVPATAFDWQVPGLREELVVALI
RSLPKAVRRNFVPVPDFARAALAAITPGEEPLLDALTRVLRRMTGVTVPREAWDTGKLPA
HLRVTFRVLDEENKPVAEGKDLPALQRRLKAEVREVVAAAAPDVARTGLREWSIGTLPRT
IEQVRAGYRVTAYPALVDEGQTVGVKVFDSAAEQAAAMWAGTRRLLRLTVANPAKFLQGR
LSNEAKLALSRNPHGGVQQLIEDATGAAIDRLVAGAGGPAWDADGFAALRDKVRADLVDT
VVEVMDRVRKVLAAAHTVQGRLTRTTDLTLVAALADIKAQLAGLVHAGFVTETGYARLPD
LLRYLAAIERRLDRLTGNPQRDRQQQDRIAVVQKEYRDLLAALSPARRNEEAVREIRWMI
EELRVNVFAQALGTPYPVSEQRIYRAMDVVEGR
NT seq
4062 nt
NT seq
+upstream
nt +downstream
nt
ctgcaccgacggaccaccgacctgatgttccgggaccagcgccggatccagcggcggctg
gacggggtacgccggttgcgcgaccccgaccggcgggacgccgcgctggccgggatcgcc
gccgacgtggccgccgccgaggcgcggctggccgcccggcgcgccgccgtgccgaaggtc
acgtacccggccgggctgccggtcagcgagcgcgccgaggacatcgccgcggtgatccgg
gaccaccaggtggtgatcgtcgccggggagaccgggtcgggcaagaccacccagttgccg
aagatctgcctggagctgggacggggcgtgcaggggctgatcgggcacacccagccgcgc
cggctggctgcccgcacggtggccgaccggatcgccgaggaactgggcaccgagctgggt
gacgtggtcggctacaaggtgcgcttcaccgaccaggtgggcgaccggtcgctggtcaag
ctgatgaccgacggcatcctgctggccgaactccagaccgaccggatgctccggcagtac
gacacgttgatcatcgacgaggcgcacgagcgcagcctcaacatcgacttcatcctcggg
tacctgaaacagctcctcccccgccgacccgacctgaaggtgatcatcacttcggcgacc
atcgagacggaccggttcgcgaagcacttcgccggaccgcccaccgaggacgcgccggac
gggaagcccgcgccggtggtcgaggtgtccgggcgcacgtacccggtggaggtgcggtac
cggccactggtcgaggtcagcgaagccgacgaggacgacggggccgacgaggagaacgtc
cgggaccagatccaggccatcggcgacgcggtcgaggagctggccgccgaggggcccggc
gacgtgctggtcttcctcagcggcgaacgggagatccgggacaccgccgacgcgctgggc
aagctggtgcagaagaagcggtcgctgctcggcaccgagatcctcccgctgtacgcccgg
ctgtccgccgccgagcagcaccgggtgttcgccccgcacaccggccgtcgggtggtgctc
gccaccaacgtcgcggagacctcgctgaccgtgcccgggatcaagtacgtggtggacccg
ggtaccgcccggatctcccgctactccagccggctgaaggtgcagcggttgccgatcgag
ccggtctcccaggcgtccgcgaaccagcgcaagggacgctgcgggcgtacctcggacggc
atctgcatccggctctacgacgagcaggacttcgcctcccggccggagttcaccgacccg
gagatcctgcgcaccaacctggcctcggtcatcctccagatgacctcgatcgggctgggt
gacgtggccgcgttcccgttcatcgacccgccggaccgccgcaacatcgccgacggggtg
aacctgctgcacgagctgggcgcgctcgaccccaccgagaccgacccggcgaaacggctc
accccgttgggccggcggctggcccagctcccggtcgacccccggctggcccggatggtg
gtggagggggaacgcaacggctgcgccaccgaggtcgtggtgatcgcggcggcgctgtcc
atccaggacccacgcgaacggccggtcgagaagcaggcccaggccgaccaggcacacgcc
cggttcaccgacgccgagtcggacttcgtcacgttcctcaacctgtggcggtacctgcgc
gagcagcagcgggcgttgtcgtccagcgcgttccgccggatgtgcaaggcggagtacctg
aactacctgcgggtacgcgagtggcaggacatcgtcagccaggtccgccaggtgttgcgt
accccggccgaggggggccgggaacgcggccggcgcgacaccccgacggagaccggccgg
cgggacgcttcgacggacgccggccggcgggacggtgagccggccggcggtggccggcgg
gaccggggcgcggaactgccggaggagatcgacaccccgaaggtgcaccagtccctgctg
cccggcctgctctcccacgtcggctggaaggacccgcagaaacacgagtacctgggcgcg
cggggcgcgaagttcgccctgttccccggctcggcactgttcaagaaaccgccgcgctgg
gtgatggccgccgaactggtggagacctcccggctgtggggccgggtcgccggccgggtc
gagccggagtggatcgaaccgctcgcccagcacctggtcaaacgcagctacagcgagccg
cactgggagaagaagcaggcggcggtgctggcgtacgagaaggtcaccctctacggcctg
ccgctggtcaccgcacggaaggtcaacttcggccggatcgaccccggcctgagccgggag
ctgttcatccggcacgccctggtcgagggcgactggtccacccaccaccagttctggcgg
gacaaccagaagctgcgcgacgacgtggaggagctggaacaccgggcccggcggcgggac
atcctggtcgacgacgagacgatcttccagttctacgacgaacggatccccgccgacgtg
gtctccgggcggcacttcgacgcctggtggaagaccgaacgccggcaccggcccgacctg
ctcaccttcacccgggagctgctggtcaacgccggccggggcggggtggacgaggccgac
tacccggaccggtggcactccgacggggtggcgctgccgctgacgtaccggttcgagccg
ggcaccccgaccgacggggtcaccgtggacatcccgctgccgctgctcaaccaggtgccg
gcgaccgccttcgactggcaggtgccggggctgcgcgaggaactggtggtggcgctgatc
cggtcgctgcccaaggcggtacgccgcaacttcgtaccggtgccggacttcgcccgcgcc
gcgctcgccgcgatcaccccgggcgaggagccgctgctggacgcgctgacccgggtgctg
cgccggatgaccggggtgaccgtgccccgcgaggcgtgggacaccgggaagctccccgcc
cacctgcgggtcaccttccgggtgctcgacgaggagaacaagccggtcgccgagggcaag
gacctgccggccctgcaacgccggctcaaggccgaggtccgcgaggtggtggccgccgcc
gccccggacgtggcccgcaccgggttgcgcgagtggagcatcggtacgctgccgcgcacc
atcgagcaggtccgggccgggtaccgggtgaccgcgtacccggcgctggtggacgagggg
cagacggtcggggtgaaggtcttcgactcggccgccgagcaggccgcggcgatgtgggcc
ggcacccggcggctgctacggctgaccgtggcgaacccggcgaagttcctccagggccgg
ctgtccaacgaggcgaagctggcgctcagccgcaacccgcacggcggcgtgcagcagctc
atcgaggacgccaccggggcggccatcgaccggctggtcgccggggcgggcggcccggcc
tgggacgccgacggcttcgccgcgctccgcgacaaggtgcgtgccgacctggtggacacc
gtggtcgaggtgatggaccgggtccggaaggtgctcgccgccgcgcacaccgtgcagggc
cggctgacccggaccaccgacctgaccctggtggccgcgctggccgacatcaaggcccag
ctcgccggcctggtgcacgccgggttcgtcaccgagaccgggtacgcccggctgcccgac
ctgctgcgctacctggcggcgatcgaacggcgactggaccggctgaccggcaacccgcaa
cgcgaccggcagcagcaggaccggatcgcggtggtgcagaaggagtaccgggacctgctg
gccgcgctctccccggcccgccggaacgaggaggcggtccgggagatccgctggatgatc
gaggagttgcgggtgaacgtgttcgcgcaggcgctcggcaccccgtacccggtctccgag
cagcggatctaccgggcgatggacgtggtggagggccgctga
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