Micromonospora cathayae: PVK37_30530
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Entry
PVK37_30530 CDS
T10286
Symbol
dpdF
Name
(GenBank) protein DpdF
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mcay Micromonospora cathayae
Pathway
mcay03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcay00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PVK37_30530 (dpdF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcay03019
]
PVK37_30530 (dpdF)
03400 DNA repair and recombination proteins [BR:
mcay03400
]
PVK37_30530 (dpdF)
Enzymes [BR:
mcay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PVK37_30530 (dpdF)
Messenger RNA biogenesis [BR:
mcay03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PVK37_30530 (dpdF)
DNA repair and recombination proteins [BR:
mcay03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PVK37_30530 (dpdF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
ResIII
Helicase_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WDZ84713
LinkDB
All DBs
Position
complement(6942617..6945202)
Genome browser
AA seq
861 aa
AA seq
DB search
MERSWTDDEADRLRAILVGQPAGGTFKDALYQRVADVMGQGGGSDLDLAVLVRHLVRRWR
LIPAYSDEVSVSLDVSARLRRSADQVGLREVSPGQWVARPWEPHWQKFDIGRHPDRPDDA
AAPGSRWSTPDGDRELPAADPFFLASTGFNTYRTPGQRAACRAVVSAKPGSTIIAMLPTG
SGKTEVALSLADSRRASATLIVVPTVALAYDFERRFREHYAPRMVRGDPSQLKFAWTGDT
QEDVREQMRSRVLSGKQPLLVTSPESMTRALRNTLAEAAARGRLAGFVVDEAHLVTHWGR
SFRPEFRMLADLRRDLLSRVGEYDAPVTLLLSATLGSYEIADLHELFSDPGPCALIAANA
LRAEPEMWIGSTEDAEERKRWVLDAVDHLPRPLALYVTRPEEATTWARWLRDHGYGQQRV
RVVTGQTGGTERQAVLTGLRAGVDGSPPTVDLVVATSAFGLGIDYPHLRSVVHACLPETV
DRWYQEIGRGGRDGEPSAAVLLTHLPADIKEADSLGVTLLTPRKAHKRWRNLWEHRIRLG
TGDSRAISAFLDLEEHSGFSREGSYNRRWNAHLVQGLVELKVLRRRLAYIEDTRDLPPAA
PGRTRDWVAVEVVRTDHEELEFWEEHWEPWRQKQMARSGAMLGTMAELARKTMPACTAIA
NYYEPGEEPYRLFGHAADTAAIAERCGRCPGCRAGGVRRAAEPHPAPRHSWPVATGFVAD
LDDLAAAAAAADGLIVLHDPYPDSVAAELAGALLARGVRHFSGVGVPETGTAATIFVDPE
PISPGDLTPCSSFVGYLNDRRVPASWLIARLRRSARHPFGPERVYDVLLVRTGASIGNRA
VGRDIGALDASTALHVLGGRA
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atggaacggagttggacggacgacgaggcggaccggttacgcgcgatcctcgtcggtcag
ccggcgggcggtacgttcaaggacgcgttgtatcagcgggtggccgacgtaatgggccag
gggggaggtagtgatctcgatctggcggtgctggtccgtcatcttgtgcgccgatggcgg
ctcatccccgcgtactctgacgaggtctcggtgtccctggatgtgtcggcacggctgagg
cgttccgcggaccaggtcggcctgcgggaggtttctcccggacagtgggttgcgcgtcct
tgggagccgcactggcagaagttcgatatcggtcgtcatccggaccgaccggatgacgcc
gccgcccccggtagccgctggagtacaccggacggcgatcgagaactcccggccgccgac
ccgttctttctggcgagcaccggattcaacacctatcgcacccccgggcagcgggccgcg
tgtcgggccgtggtgtcggcgaagcctggcagcacgatcatcgcgatgctgcccaccggt
tcgggcaagaccgaggtggcgttgagcctcgcggactcacgccgagcttcggcgactctc
atcgtggtgccgaccgtggcgctggcctatgacttcgagcgccggttccgggagcactat
gcgccgcggatggtgcgcggtgacccgtcgcagttgaagttcgcctggaccggcgacacc
caggaagacgtgcgtgaacaaatgcgatcgcgcgtgttgtctgggaaacagccgctgttg
gtgacctcaccggagtcgatgacacgcgcgcttcggaacacgctcgcggaagccgcagca
cgtggccgcctagccggattcgtggtagacgaggcacatctggtgacccactggggacgc
tcgttccggccggagttccgaatgctcgccgatctgcgccgtgacctgctcagccgggtc
ggcgagtacgacgccccggtaacccttctgctgagcgccacgctgggatcatacgaaatc
gctgatctgcacgagttgttcagcgatcccgggccgtgcgcgcttatcgccgccaatgcc
ctgcgggccgaaccggagatgtggatcggcagcaccgaggacgccgaggagcggaagcga
tgggttctcgacgcggtcgatcatctgccgcgcccactcgcgctttacgtcacgcggccg
gaggaggcgacgacgtgggcgcgctggctgcgtgaccacggctacggtcagcagcgggtg
cgggtggtcacaggccaaaccggcgggacggaacggcaggcagtgctcactggactgcga
gccggagttgacggctcgccgcctaccgtcgatctggtagtggccacgtcggcgttcggc
ctgggcatcgactatccgcacctgcgttcggtcgtccatgcgtgcctgcccgagaccgtc
gaccgctggtaccaggagatcggtcgtggcggcagggacggcgagccgtccgctgctgtg
cttctcacccacctgccggccgatatcaaggaggcagacagcctcggcgtcacgttgctc
acgccgaggaaggcccacaagcgctggcggaacctctgggaacaccgaatccggctcggc
accggcgattcacgggcgatcagcgctttcctcgatctggaggaacacagcggattttcc
cgcgaaggttcctataatcgccgctggaatgcgcacctggtacagggcctggtcgagttg
aaggtcttgagaaggcgcttggcctacatagaggatacccgggacttgccgccggccgct
cccggcaggacgcgcgactgggtcgccgtcgaggtggtgcgcaccgaccatgaggaactc
gagttctgggaagagcattgggaaccgtggcggcagaaacaaatggctcggtccggcgcg
atgctcggcacgatggccgaactggccaggaaaaccatgccggcctgcaccgccattgcc
aactactacgaacccggcgaggaaccctaccgcctgttcgggcatgcggccgacacagcc
gcgatcgcggaacggtgcggccggtgtccgggctgccgggcggggggcgtacgccgtgcg
gccgaaccgcatcccgcgccgcgccattcctggccagtcgcgacgggtttcgtggccgac
ctggacgacctagcggcggcagccgcggcggccgacggcctaatcgtcctgcacgacccg
tatccggacagcgtcgccgctgagctcgccggggcgctactcgcccggggcgtgcggcat
ttcagcggggtcggcgtgccggagacgggcaccgcggcgacgatcttcgtcgatccagag
ccgatctcgccgggcgacttgacgccgtgttcgtcgttcgtcggttacctcaatgaccgg
cgggtgccggcgtcctggctaattgcacggctgcgacggagcgcccgtcatccgttcggc
cctgaacgggtctacgacgtactactggtgaggaccggcgcgagtatcggcaaccgagcc
gtcggtcgggacattggggcgctcgatgcgagtaccgcactacacgtccttggaggacga
gcgtga
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