Montipora capricornis (leaf plate montipora): 138014384
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Entry
138014384 CDS
T10557
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
mcaz Montipora capricornis (leaf plate montipora)
Pathway
mcaz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mcaz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
138014384
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcaz03021
]
138014384
03019 Messenger RNA biogenesis [BR:
mcaz03019
]
138014384
Transcription machinery [BR:
mcaz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
138014384
Messenger RNA biogenesis [BR:
mcaz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
138014384
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_3
zf-CCHC
zf-CCCH_4
zf-CCCH_12
zf-CCCH_2
zf-CCCH_RBM22
Motif
Other DBs
NCBI-GeneID:
138014384
NCBI-ProteinID:
XP_068717546
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All DBs
Position
8:complement(10120622..10130758)
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AA seq
268 aa
AA seq
DB search
MEEIVASVADLKFEIEIQLYNQVGVQPLPFPGMDKSGAAVCEYFMRNVCNRGPLCPFRHT
KGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECQYLHIDPESK
IKDCPWYDRGFCKHGPSCRHRHVRRVICLNYMCGFCPEGPKCKHIHPRFELPVKDETNEK
KSMVNIVCHYCSLPGHKASSCPSNPHKENFKNLGNQSNINIVPTTNQINTEHERPMRRPL
ETVTCYKCGDKGHYANKCPKTRSELIGL
NT seq
807 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaatcgtcgcaagtgtggcagatttaaagttcgagatcgagatccagctgtac
aatcaagttggtgtgcaacctcttcccttcccgggaatggataagtctggtgcagctgtc
tgcgaatatttcatgaggaacgtgtgtaacagggggccattgtgtccctttcgacacacc
aaaggggaaaagactgtggtatgtaaacactggttgagagggctgtgcaaaaagggtgat
caatgtgagtttcttcatgaatacgacatgacaaagatgccggagtgctacttttattcc
aagtttggggaatgcagcaacaaggaatgccagtatcttcacattgatccagaatctaaa
attaaagactgtccttggtacgacagaggattctgcaaacatggcccaagctgcaggcat
cggcatgtcagaagagtgatttgtctcaattatatgtgtggattttgtccagagggcccc
aagtgtaaacacatacatccacggtttgaactcccagtaaaagatgaaacaaatgaaaag
aagtcaatggtgaacatcgtttgtcactactgcagtctacctggtcataaagcatcaagc
tgcccttccaatcctcacaaagagaattttaagaaccttggaaatcagtccaacataaac
attgttccaaccacaaatcaaataaacacagaacatgaacgaccaatgcgaagacccctg
gaaactgtgacctgttacaagtgtggagacaaaggtcattatgctaacaagtgtcccaaa
accagatcagagttgattggattatag
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