Montipora capricornis (leaf plate montipora): 138024161
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Entry
138024161 CDS
T10557
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
mcaz Montipora capricornis (leaf plate montipora)
Pathway
mcaz03018
RNA degradation
Brite
Enzymes [BR:
mcaz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
138024161
Messenger RNA biogenesis [BR:
mcaz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
138024161
Spliceosome [BR:
mcaz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
138024161
Complex C
U4/U6.U5 tri-SnRNP related factors
138024161
Ribosome biogenesis [BR:
mcaz03009
]
Eukaryotic type
Pre-60S particles
Helicases
138024161
Transfer RNA biogenesis [BR:
mcaz03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
138024161
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
ATPase_2
Motif
Other DBs
NCBI-GeneID:
138024161
NCBI-ProteinID:
XP_068727369
LinkDB
All DBs
Position
11:20854031..20909554
Genome browser
AA seq
1028 aa
AA seq
DB search
MADAFGEEDIFSVFEENLSSNSSKKKQNDKRDTNDPSASDVSADITQVGEKRQFKPDVID
LALDETGTKKAKFDDLESLLESIPRVNVRSVETIEACTHEVAVPEGCEYVPLVKKAIKQA
KEYPFILDPFQKESLKCLENNQSVLVSAHTSAGKTVVAEYAIALSLQNKQRVIYTTPIKA
LSNQKYRELYEEFQDVGLMTGDVTINPSASALVMTTEILRNMLYRGSEVMREVAWVVFDE
IHYMRDKERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWIAHLHKQPCHVVYTDFRP
TPLQHYIYPSGGDGLFLVQDEKGDFREENFQKAMAVIREGGTEPGPQRGRKGGTKGPSSC
FKIVKMIMERNFQPVIIFSFSKKECEAYALQMSKLEFNSAHEKKLVEEVFNNAIDCLSDE
DKKLPQVEHVLPLLKRGIGIHHSGLLPILKETIEILFSEGLIKALFATETFALGLNMPAR
TVVFTNARKFDGKDFRFITSGEYIQMSGRAGRRGIDDRGIVILIIDEKMGPDVGKALLKG
NADPLNSAFHLTYNMVLNLLRVEEVNPEIMLEKSFYQFQNYAAVPGMIDKLKALEVKRDA
FKIPNEESVTSYYKIRQQLKKLGNDMLGFIHQPKYCLPYMQPGRLIQVKNNDTDFGWGVV
LNFQKKANQKSGPSQGETLFVIEALLNCSSKSVKSADGDKPQPCGPDEKGEMQVVPILLH
LVQAISSVRLYIPKDLRSLDSRQSVGKSVKEVKRRFPDGLPLLDPVEDMGIKDDGLKTVV
RKIEMLEHRMYIHPLHKDPSLESLYGQYEQKAKINAEIKSVKKELRRTRTVLQLDELKSR
KRVLRRLGYATAADVIELKGRVACELSSGDELLLTEMIFNGVFNDLSVQQCVALLSCFVF
EEKSDELPKLTEELAGPLRQMQESARRIGKVSEEAKLEIDVETYVESFKPHIMDVVFAWA
NGASFSQICKMTDAFEGSVIRCMRRLEELLRQMCQASKAIGNTELENKFAEGIIKIKRDI
IFAASLYL
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgcttttggagaagaagatatcttttctgttttcgaggaaaatttatcatca
aatagcagcaaaaagaaacaaaatgataagagagataccaatgatccatctgcatctgat
gtctcggcagatattacacaggtcggagagaaaaggcagtttaaacctgatgttatcgat
ctcgcactggatgaaactgggacgaagaaagcgaagttcgacgacttagagagcctcttg
gaatcaatacctcgggtaaatgttaggagtgtcgagaccatagaggcttgtactcatgag
gttgctgttcccgagggatgtgaatatgtgccattggtcaaaaaagcaataaaacaagca
aaggaataccctttcatcttggatcctttccagaaagaatcactgaaatgcttggaaaac
aatcagtctgtgttggtgtcagcgcacacatcggcagggaaaacagttgtagcagagtat
gccattgctttgtcactgcagaataaacaaagggtgatctacactacgcctatcaaggct
ctaagtaatcaaaaatacagggaattgtatgaagaattccaggacgttggcctaatgact
ggagatgtgaccatcaaccctagcgctagtgctcttgttatgacaacagagattttacga
aacatgctttacagaggttctgaggtaatgagagaagtagcttgggttgtgtttgatgaa
attcactacatgagagataaagagaggggtgttgtgtgggaagaaacaattatcctccta
ccagacaatgttcattacgtgtttttatctgccacaattccaaatgccagacaatttgca
gagtggattgctcatcttcataaacagccttgtcacgttgtctatacagattttcgaccc
actcctcttcagcattacatttatccttctggtggtgatggattgtttctggtgcaagat
gagaagggtgattttcgggaagaaaatttccagaaggcaatggctgttatacgagaagga
ggaacagagcctgggccccagagaggaaggaagggagggacaaagggtccttcaagctgt
tttaaaatagtgaaaatgataatggaaaggaattttcaaccagtgattatcttcagcttc
agcaagaaagaatgtgaagcatatgctctgcaaatgtcaaaacttgaattcaattcagct
catgagaaaaaactagtggaagaagtgttcaataatgctattgactgtttatcagatgaa
gacaaaaaactccctcaggtagaacatgtccttcccttgttgaaacgtggcattggcatc
catcactctggactgctgccgattttaaaggagaccattgaaatccttttttcagaaggt
ttgatcaaggctctctttgccacagaaacatttgctcttggtctcaacatgcctgccagg
acagttgtgttcacaaatgctaggaaatttgatggaaaagatttcagatttataacttca
ggagagtacattcaaatgagtggcagagctggaaggcgtggtattgatgacagaggaatt
gttattttaatcatagatgagaaaatgggtcctgatgtaggaaaagctttgctgaagggt
aatgctgatcctctgaacagtgcattccatcttacttacaacatggtgttgaacttgctg
cgtgtggaagaagtgaacccggaaattatgttggaaaagtcattttatcagtttcagaac
tatgccgcagtgcctggaatgattgacaaactgaaagctcttgaggtcaagagagatgca
tttaaaatcccaaatgaagaatccgtcacatcatattataagatcagacaacagctgaaa
aaactgggcaatgatatgttgggttttatacatcaacccaagtactgtttgccttacatg
cagccgggaagactaattcaagttaaaaataatgacactgattttggttggggtgttgtt
ctcaactttcaaaagaaggcaaaccaaaagagtggaccaagccaaggagagacattgttt
gtgatagaggccttgttaaactgctctagcaaatcagttaaatcagctgatggagacaaa
ccacagccatgtggtcctgacgaaaaaggagaaatgcaggttgttccaatcttgctacat
ctggttcaagccataagcagtgtgagattatacattcctaaggacttgagatcactggac
agcagacaaagtgtaggcaaatcagttaaggaagtaaaacgtcgattcccagatggcctt
ccgctgctggatccagttgaggatatgggaataaaagatgatggattaaaaacagttgtt
aggaaaatagaaatgttggaacatcgcatgtacattcatccgttacataaggatccttca
ttggagtcgttgtatggccaatatgaacaaaaggcaaagataaatgctgaaatcaagtca
gtgaagaaagaactaagaagaacaaggacggttcttcagctggatgaactcaagagcaga
aagcgagttctcagaagattgggatacgcaactgctgctgatgttattgagttaaaaggg
cgtgtagcttgcgagctgagcagtggcgatgagctgcttttaacagagatgatattcaat
ggtgtcttcaatgatctctcagtacagcagtgtgtggctttactgagctgttttgtgttt
gaggaaaagagtgatgaattgcccaaacttactgaggagttagcaggtccactgaggcag
atgcaggagtcggcccgtcggattggaaaagtatcagaggaagcaaagctcgagattgac
gttgaaacttatgtggagtccttcaagccccatatcatggatgttgtatttgcatgggca
aatggggcatcattttcccaaatctgtaaaatgaccgatgcatttgaaggaagcgtaatt
aggtgtatgcgtcgtctagaggagcttttaaggcaaatgtgccaagcttccaaggccatt
ggaaatacagagctggaaaataaatttgctgaaggaattatcaagattaaacgagacatc
atatttgctgctagcctgtatctctaa
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integrated database retrieval system
