Montipora capricornis (leaf plate montipora): 138024491
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Entry
138024491 CDS
T10557
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
mcaz Montipora capricornis (leaf plate montipora)
Pathway
mcaz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mcaz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138024491
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcaz03019
]
138024491
03041 Spliceosome [BR:
mcaz03041
]
138024491
Messenger RNA biogenesis [BR:
mcaz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
138024491
Spliceosome [BR:
mcaz03041
]
Complex B
Other components
Prp19-related factors
138024491
Complex C
138024491
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
TPR_2
TPR_12
TPR_8
ARM_TT21_C
Mad3_BUB1_I
ARM_TT21
TPR_7
PPR
RPN7
DHR-2_Lobe_A
NRDE-2
Motif
Other DBs
NCBI-GeneID:
138024491
NCBI-ProteinID:
XP_068727807
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All DBs
Position
2:47002838..47024303
Genome browser
AA seq
860 aa
AA seq
DB search
MPVSSRNLIIEEEDLPYEEEIIRSPYSVKFWMRYIEHKAKKGSNKALNLLYERALKELPG
SYKIWYLYLKERRKQVRGRPITDPAYEDVNNAFERSLVFMHKMPRIWIDYCQFLVDQCKV
TRSRRTFDRALRALPITQHTRIWPLYLKFVRKHHIPETAVRVYRRYLKLEPENTEDYIDY
LKSVGWLDEAAARLAFIVNKEKFVSKEGKSNHKLWQELCELISKNPDKIKSLKVTDIIRG
GLRRFSDSLGQLWNSLADFFIRSGHFEKARDVYEEAIQTVMTVRDFGQVFDAYAQFEESM
ISAKMETTAEMGATEEDDIDLELRMARFENLMDRRPLLLSSVLLRQNPHNVHEWHKRIKL
YEGKPKEIINTYTEAVQTVNPKLASGKPHTLWVEFAKFYEQHRQLAEARVIFDKATKVNY
RKVDDLASVWCEFSEMEIRHENYQQALDLMRRATAMPSAKTDYYDETETVQRRVYKSLKL
WSMYADLEESLGTFQSTKAVYNRILDLRIATPQIIINFCTFLEEHHYFEEAFKIYERGVA
MFKWPNVFDIWNTYLTKFIHRYGGKKLERARDLFEQVLEGCPAKFAKCFYLMYAKLEEEH
GLARHAMTIYERATKAVLPEEQFEVSFSPTKNQRVQTALIVMFNLYIKQAAEIFGVTHTR
EIYEKAIEVLLDDQAREMCVRFADLERKLGEIDRARAIYMHASQLADPRTTPAFWKVWHD
FEVRHGNEDTFREMLRIKRSVQAQFNTQVNFMSAQMLAAAASKTAGASTDEPVVDDMQRL
EQQAQAVAAKDVTAKLKEKVLFVRGETSDSDNKETEAVANPEEIDIDEDDDDDNANEQDV
QVEQQAVPIKVFGGLRQDDD
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgagctccaggaatcttattatagaagaagaagatcttccatatgaagaagaa
ataatccgtagtccttactctgtgaaattttggatgagatacatagagcataaagctaaa
aaaggctccaacaaggccctaaatctgctttatgaacgtgctctgaaggaactaccagga
agctacaagatttggtatctgtatcttaaagaaaggagaaagcaagttcgaggaagacct
ataacagatccagcgtatgaagatgttaacaatgcgtttgaaagatccctggttttcatg
cacaagatgcctagaatttggatagattattgccagttcttagttgaccaatgcaaagtg
acaagatcaaggcgcacctttgaccgtgctctaagggctcttcctatcactcagcacacc
cgcatttggccactttatctcaagtttgtccgcaaacaccacattcctgagacagctgtg
agagtgtacagaagatatttaaagcttgaaccagaaaacactgaagattatattgattat
ctcaagtctgtgggctggctggacgaagcagcagcacggctggcattcatcgtcaacaag
gagaaatttgtttccaaggaggggaaatcaaatcataagctttggcaagagctttgtgaa
cttatttccaagaatccagacaagataaagagtctcaaagttactgacattattcgtggg
ggattgcgcaggttttctgacagtttgggtcaactttggaactctcttgctgatttcttt
ataagaagtggacactttgaaaaggctcgtgatgtgtatgaggaggctattcaaacagtg
atgactgtcagagattttggacaagtgtttgatgcatatgcacagtttgaagaaagcatg
ataagtgcgaaaatggaaacaacggcagaaatgggagctactgaagaagatgatattgac
ttggaacttaggatggcaagattcgagaatttaatggatagaagacccctgctgcttagc
agtgtgctgttgcgccaaaaccctcacaatgtccacgagtggcataaaagaatcaagtta
tatgagggaaaacctaaagaaatcatcaacacatacacagaagcagtccagacggtgaat
ccaaagctggcatcaggaaaacctcacacactgtgggtggagtttgctaagttttacgaa
cagcacagacagcttgcggaggctagggtgatatttgataaagctacgaaagtgaattat
cgcaaagtggatgacttggccagtgtatggtgtgagtttagtgaaatggaaatcagacat
gaaaactaccaacaggctcttgatcttatgaggagagcaacagccatgccgtctgcgaag
acagactactatgatgagactgaaacggtacaaagacgtgtctataagtctttaaagctg
tggtccatgtatgccgacctggaagagagtttaggcacatttcagtcgaccaaggcagta
tacaaccgtattttggacctgcgaatagcaactcctcagatcatcataaacttctgtacg
tttcttgaagagcatcactattttgaggaagctttcaagatttatgagcgcggcgttgcg
atgttcaaatggccaaatgtgtttgatatctggaacacgtatctgacaaagtttatccac
agatatggtggcaagaaattggagcgtgcaagggacctctttgaacaagttttggaaggt
tgtcctgctaaatttgcaaaatgtttttatttgatgtacgccaagcttgaggaagagcat
ggtcttgctcgtcatgctatgacgatatacgagagagctactaaagccgtcctaccagag
gaacaatttgaagtaagcttttcaccaaccaaaaatcaaagagttcaaacggcattaatt
gtaatgttcaacctgtatataaaacaagcagcggagatatttggtgtgacacacacgcgt
gaaatctacgaaaaagccattgaagtgttactagatgatcaagcgagagagatgtgtgtg
aggtttgctgatcttgagcgtaaactgggagagattgaccgagctagagcaatttatatg
cacgcttcacaattggcggatccgcggaccaccccggcgttctggaaagtgtggcatgac
ttcgaggttcggcatggaaacgaggatacattccgtgaaatgttacgaatcaaaaggagc
gtgcaggcgcaatttaacacacaggttaatttcatgtcggcgcaaatgttggcagcagct
gcaagcaaaaccgctggagcaagtacagatgaaccagttgttgatgacatgcagcggtta
gaacagcaggctcaagcagtagcagccaaggatgtgactgccaagttaaaagaaaaagtc
ctgtttgtcagaggggaaaccagtgattctgacaataaagagacggaagctgtggcaaac
ccggaagaaatagacattgacgaagatgatgatgatgataatgctaatgaacaagacgtt
caagttgaacagcaagcagtcccaatcaaggtttttggtggattaagacaagatgatgac
tga
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