Montipora capricornis (leaf plate montipora): 138030773
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Entry
138030773 CDS
T10557
Name
(RefSeq) spliceosome RNA helicase Ddx39b
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
mcaz Montipora capricornis (leaf plate montipora)
Pathway
mcaz03013
Nucleocytoplasmic transport
mcaz03015
mRNA surveillance pathway
mcaz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mcaz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138030773
09122 Translation
03013 Nucleocytoplasmic transport
138030773
03015 mRNA surveillance pathway
138030773
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcaz03019
]
138030773
03041 Spliceosome [BR:
mcaz03041
]
138030773
Enzymes [BR:
mcaz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
138030773
Messenger RNA biogenesis [BR:
mcaz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
138030773
Spliceosome [BR:
mcaz03041
]
Complex C
Other components
EJC/TREX
138030773
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
138030773
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Thioredoxin_6
AAA_19
ApbA
Motif
Other DBs
NCBI-GeneID:
138030773
NCBI-ProteinID:
XP_068734751
LinkDB
All DBs
Position
2:complement(63088111..63096379)
Genome browser
AA seq
429 aa
AA seq
DB search
MAEDGDAETELLDYEEEETETPVETPAVNEKGKKDVKGTYVSIHSSGFRDFLLKPELLRA
IVDCGFEHPSEVQHECIPQAILGMDIICQAKSGMGKTAVFVLATLQQLEQIDGQVSVLVM
CHTRELAFQISKEYERFSKYMNNIKVSVFFGGINIKKDQQTLKTNCPHIVVGTPGRILAL
AREKSLNLKHIKHFILDECDKMLEQLDMRRDVQEVFRMTPHDKQVMMFSATLAKEIRPVC
KKFMQDPMEVYVDDETKLTLHGLQQYYCKLKDQEKNRKLFDLLDVLEFNQVIIFVKTVQR
CKALAELLVEQNFPAIFIHRGMNQEDRLSHYKQFKDFSKRMLVATNLFGRGMDIERVNIV
FNYDMPDDSDTYLHRVARAGRFGTKGLAITFVCDEKDAKVLNEVQDRFEVNVGELPEEID
LTSYIEAVR
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagacggtgatgctgaaaccgaattgttggactacgaagaggaggagacagag
accccagtggaaactccggcagtcaacgagaagggaaagaaagatgtaaagggaacatac
gtcagtattcatagctctggctttcgagattttctattgaagccggaacttctgcgcgcc
attgtcgattgtggattcgaacatccttccgaagttcaacatgagtgcatccctcaggca
atccttggcatggacatcatctgtcaagctaagagtggcatgggcaagacagctgtgttt
gttctagccacccttcaacagctagagcaaattgatggtcaagtcagtgtgttggtcatg
tgtcacacacgagagttggccttccagatttctaaagagtatgagaggttttctaaatac
atgaataacatcaaagtttcagtgttttttggtggcataaacatcaagaaggaccagcag
actctgaagacaaactgtccacacatagttgttggcacaccaggcagaattttggcactg
gcacgtgaaaagtcactgaatctcaagcatatcaagcatttcatccttgacgagtgcgac
aagatgttagaacagcttgatatgcgaagagatgttcaagaagtattccgcatgacaccc
catgacaaacaagttatgatgttcagtgcaaccctggccaaagagatccgacctgtgtgc
aagaagttcatgcaagatccaatggaggtgtatgttgacgatgagacaaagcttacgctg
catggccttcagcagtattattgcaaacttaaagaccaggagaagaatagaaagcttttt
gatctcctagatgtgttagagttcaatcaggtgatcatctttgtcaagacagtgcagcgg
tgtaaggctcttgcagagctgctggtagaacagaacttccctgccatttttatccacagg
ggaatgaatcaggaagataggttatcacattataaacagttcaaagatttctcaaagaga
atgcttgtggccaccaatctgtttggacgtggaatggacattgagagagtgaatattgtg
tttaattatgacatgcctgatgactctgacacctatcttcatagggttgctagggctggt
cgatttggaaccaagggtttggcaatcacatttgtctgtgatgaaaaagatgcaaaagtt
ctaaacgaagtccaagatcgctttgaagtcaatgttggggaacttccagaggaaatagat
ctcacctcgtacattgaagcagttcgctga
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