Montipora capricornis (leaf plate montipora): 138038619
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Entry
138038619 CDS
T10557
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
mcaz Montipora capricornis (leaf plate montipora)
Brite
KEGG Orthology (KO) [BR:
mcaz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mcaz03041
]
138038619
Enzymes [BR:
mcaz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
138038619
Spliceosome [BR:
mcaz03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
138038619
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
Helicase_C
R3H
OB_NTP_bind
DEAD
HA2_N
Ank_2
Ank_5
Ank
AAA_22
ATPase
nSTAND3
AAA_19
Cas3-like_C_2
Ank_4
T2SSE
TsaE
AAA_16
Sigma54_activat
AAA_7
AAA_23
Motif
Other DBs
NCBI-GeneID:
138038619
NCBI-ProteinID:
XP_068740702
LinkDB
All DBs
Position
2:5848102..5892500
Genome browser
AA seq
1633 aa
AA seq
DB search
MASSVSSNRRKKQPEICVKEEFKIAVKIALDRFRFEEKQKVLEFPSSFTSVERAYIHRMS
QNIGLTSKSKGKGSNRYLTISKKDLTTGSYNSILKLSSNACQHIEHLSKKFPLNIKERQE
LQPKTERSAVTFDSGRSSRENKVVGKLNNNTPAVPPVVKENELSSFRKSLPIHELREEIL
KLISENQVLLISGETGSGKTTQVPQFILEDANTQATPCRIVCTQPRRISALSISDRVATE
RGERLGQTVGYQIRLDNRISPKTLLTYCTTGVLLQTLMSGDNSLSFVTHVIVDEIHERDR
FSDFLLIALRDLLAVNRRLKLILMSAALDIQLFIDYFGKCPVVHVPGRCFEVKSYFLEDV
LRMTSYCSKEMAKHLKESSKGKIKIECADKSTSLVIPSKKQEPTPEKENFDESKIVEKAD
EAEDGDNAIVEELDTPDSLDLEPDEMFDEESLQPREDVELEEDSNFRIDEELADGEDIDE
NILLEDDDNEDDKEGRDDDDDDVNDELVVEEEKNDDGEIHEVEEGVEMLKLEDEIENDGV
QAEAAGSGDLQEEESDSEEQYLREEMDNSISEAWLNGNEDAFAQILYLIIHEDISVDYQH
SETQATALMVASGRGCSSLVEQLLNLGANPLIKEPKNGWTAVDWAKKWEHTKVVELLESS
LSSPKVPYIDETALEKDSKELSDESKELLSIYHKTFDDDRIDHELIISLLSYICGMQQEG
AILVFLPGYDDIITLRDSLTSHREFGNSKRYQIFILHSSMQPSEQREVFRKLHHTMRKII
LSTNIAETSVTIDDVVFVVDCGKVKEKSFDALTSVSTLHPVWVSKASAIQRKGRAGRCSP
GTCFHLFSRVRYDNLLKYQIPELLRTPLQELCLHTKFLASPNTSIADFLSKAADPPPFLV
LRNAVALLKTIDALDQWEDLTDLGRHLADLPLNPQLGKMVLYSVVLKCLDPVVIVACALA
YRDPFVLPMYSAEKRAAAAARKKLILDPYSDHLVFVQVFRSWQRARSQGYDKNFCRRNYL
SQATLEMMAGMRSQILGQLKVAGFIRPRGAGDIKDLNSNSNNWAVVKAALCAGTFPQVAR
VDRASSKLTTSKEKKARFHNSSIMYQPPSHGESMSSAQAKAIAKLPSDWLIYEEMARLYT
TVTVKCCTLVSPVTVALFTGPSLSSEHVTQDPLASRDGERYPGEGFVRESESSDSETEDD
TTGEKNKDKGMSFKVDDWIALSANQEVVNHVSYLRHKMQALVIRRIRSPSRPWSQVDEMV
VRAVAAVLSAEEHVINPSLQPRQRQMRPAGNESGADSRMRMERSHFAAQFSSREQIRNSS
GSPAKSQRPMSPQNDTKASGESLGWMTRPNQQREATCYFIMKCNNQRNLDISMAKGIWAT
TLANEKKLNRAFKETKLVILVFSVQGSGHFQGYARMTSSIGKEKSPEFGSSSLSGVFSVE
WMKKANIPFQQAHHLVNPWNDHKKVQISRDGQELEPKIGEELCKLWDADHSTQGGRMTRT
TNSISRRGKPSGTVQSESHPSPSQWQSTQPSVSYATMQQVYTTHTPSLPIPVPISPARHT
IPAQYPRHQVVTAQPMAVHTHPTVPFGAHAVALQSHFRPTVPRFSGAIVSTPHMKTMGPP
PRGSRGPFNDSRK
NT seq
4902 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcctctgtgtcatctaataggaggaaaaagcagcccgaaatttgcgttaaagaa
gagtttaagattgctgttaaaatagcccttgatagattccgctttgaagaaaagcagaaa
gtgttggagtttccgtcatcttttacatctgttgaacgagcctatatacaccgaatgagc
cagaatattggacttacttccaaaagcaaggggaaaggaagcaacaggtatctgactatt
tcaaaaaaagatctcaccactggaagctataacagcattttaaagctctccagcaatgct
tgccaacacattgaacatctctcaaagaagtttcctttgaatatcaaggaaagacaggaa
cttcaacccaaaactgaaagatctgcagtgacatttgattcaggtcgcagttcgagggag
aataaggttgttggcaaacttaacaataatacccctgctgtcccgccagtggtaaaggaa
aatgagctgtcttcttttcggaaatctttgccaatccatgaacttcgagaagagattttg
aaacttatatcagagaaccaggttcttctcatatcaggcgagacaggatctggaaaaaca
acacaggttcctcagttcattctcgaagatgctaatactcaagcaactccatgccgcata
gtttgtactcagcctcgcaggatctctgcgttatcaataagtgacagagttgctactgaa
agaggagagaggcttggtcagactgttgggtatcaaataaggcttgataacagaatatct
ccaaaaacattgttgacatactgtacgactggggtgctgttacaaactctgatgtctggg
gacaattctctgtcattcgtcacccatgttattgtggatgaaatccacgagcgggatagg
ttttcagattttctcttgattgccttgagggatcttcttgctgtaaatagacgactcaaa
ttgattttgatgagtgcagctctggacatccagcttttcattgactattttggaaaatgt
cctgtggttcatgttcctggtagatgctttgaggtaaaatcatactttctggaagatgtg
cttagaatgacatcctactgtagcaaagagatggccaagcatctaaaagaatcatcaaag
gggaaaatcaagattgaatgtgcagacaaaagcacctctcttgtcattccttcaaagaag
caagaaccaactccagagaaagaaaattttgatgagtccaaaattgttgaaaaggctgat
gaggctgaagatggagacaatgcgattgtcgaggaacttgacactcctgattcactggat
ttggaaccagatgaaatgtttgatgaagaaagtctgcaaccaagagaagatgttgaactg
gaagaggattccaacttccgaatcgatgaagagcttgctgatggagaggatattgatgag
aatattttactagaagatgatgacaatgaagatgacaaggagggcagagatgatgatgat
gatgatgtgaatgatgaacttgttgttgaagaggagaagaatgatgatggggaaatccac
gaagtggaagaaggagtagaaatgttgaaactggaagatgaaattgagaatgatggtgtt
caagccgaggccgctggcagtggtgatctacaagaggaggaaagtgacagtgaagaacaa
tatttgagagaggaaatggataacagtatttcagaggcttggctaaatggaaatgaggat
gcatttgcacagattctttacttaattatacatgaggacattagtgtggattatcagcat
tcggagacccaagccactgctcttatggtagcatcaggccgaggctgttctagtcttgtt
gaacagctgctcaatttgggggctaatccactcatcaaggaaccaaagaatggctggact
gcagttgactgggcaaagaaatgggaacacacaaaggtggttgaacttcttgagtcatcg
ctgtcatcacccaaagttccgtacattgatgaaacagctctagaaaaagactccaaagag
cttagtgatgaaagcaaggagttgctctccatctatcacaagacatttgatgatgataga
attgaccatgagcttattattagtttgctgagttatatttgtggcatgcagcaagaagga
gctattttagtgttcctccctggctatgacgatatcatcacgctgcgggatagtttgacc
tctcacagagaatttggaaattcaaaaaggtatcagatcttcattctgcattcctctatg
cagccttcagaacaaagagaggttttcagaaaactgcatcacaccatgaggaagattatt
ttgtccaccaatatagctgaaaccagtgtgacaattgacgatgttgtgtttgtggtagat
tgtggaaaggtgaaagagaaatcatttgatgctttgacatcagtgtccacattacaccca
gtgtgggtgtctaaagcgagtgctattcagagaaaaggaagggctggaagatgctcccct
ggaacttgttttcacttatttagtcgtgtgcggtatgacaacttgttgaaatatcaaatc
ccagagctgttaagaacgccattgcaggaactatgtcttcatacaaagttcttagcatcc
ccaaacacatcaatcgctgattttctgtcaaaagcagctgaccctccaccgtttttggtg
ctgagaaatgctgttgccttgctgaagacaattgatgccttagatcaatgggaggatctg
acagaccttgggcgtcatcttgctgacttgcctctcaatccccagttgggaaagatggtt
ttgtattccgtggtgcttaagtgccttgacccagtggtgattgtagcttgtgcactagcg
tacagggatccttttgtccttcccatgtactcagcagagaagcgagcggcagcggcagct
agaaaaaaattaatattggatccctacagtgatcacttggtctttgttcaagtctttcga
agctggcagcgggcaagatctcagggatatgataaaaacttctgccgtaggaattatttg
tctcaagccacattagaaatgatggctggcatgagatcacagattcttggtcagctgaaa
gttgcaggttttattagacctcgtggtgctggagacattaaagacttgaattccaactcc
aacaactgggcagttgtcaaggcagctctgtgtgcagggacatttcctcaagttgcccgt
gtggacagagcctcgagcaaacttacaacatcgaaagagaagaaagctcgtttccacaat
tcatcgattatgtaccagcccccatcacatggagagagtatgtcaagtgcacaggcaaaa
gccatagcaaaactcccatcagactggctaatttatgaagaaatggcaaggttgtatacc
actgttacagtaaaatgctgcacactggtgtcaccggtgactgtcgctctcttcactggc
cctagcctatcatctgaacatgttactcaggatcctctggcttctcgtgatggagagaga
taccctggagaaggctttgtgcgagagagtgagagcagtgacagtgaaacagaagacgac
accacaggagagaagaataaagacaaaggcatgtcattcaaggtggatgattggatagca
ctttcagcaaaccaagaggttgtaaaccacgtgtcatatttgcgtcacaagatgcaagca
ttagttatccgaagaatacgatctccctcaaggccatggtcacaagtggatgagatggtt
gttcgtgctgtagcagcagttctgtcagccgaggagcatgtcatcaatccttcgttgcaa
cctcgtcaaagacaaatgcgacctgcaggtaatgaaagtggagctgattcaagaatgaga
atggaaaggtcccactttgcagctcagttttcttcaagagagcagattagaaattcttca
ggttcaccagctaaaagccaaagacctatgtcacctcaaaatgatactaaagcatctggg
gaaagcctagggtggatgacacgtccaaatcaacaacgagaagcaacttgctactttatt
atgaaatgcaacaatcaacgaaacttggacatctccatggctaagggcatttgggcaaca
acactggccaatgagaagaagcttaaccgtgccttcaaggaaaccaagcttgttattctt
gtcttctctgttcaaggaagtggccattttcaaggttatgcacggatgacttcctccatt
ggtaaagaaaagtcgcctgagtttggttcaagttcactcagtggagtgttcagtgtagaa
tggatgaagaaggctaatattccatttcagcaagctcatcatttggtaaacccgtggaat
gatcataagaaagttcagattagtcgtgatggtcaggagctagaacctaaaattggtgaa
gagctttgcaagctatgggatgcagaccattccactcagggtggacgcatgacaagaaca
accaatagcattagcagacgaggaaagccatcaggaactgtgcaatcagaatctcacccc
tcccctagtcagtggcagagtacacagccaagtgtgagctatgccacgatgcagcaggtg
tacacaactcacaccccatccctcccaatccctgtaccaatttcccctgctcgacacacc
atccccgctcagtatcctcgtcatcaagttgtcacagctcagcctatggcagtccacacc
cacccaactgttccttttggagcacatgctgttgcactacagtctcattttcgtccaaca
gtccctaggttttcgggagctattgtttcaacaccccatatgaagacaatggggccaccc
ccgcggggctcaagaggaccatttaatgattcaaggaagtga
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