Montipora capricornis (leaf plate montipora): 138042369
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Entry
138042369 CDS
T10557
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
mcaz Montipora capricornis (leaf plate montipora)
Pathway
mcaz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcaz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138042369
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcaz03019
]
138042369
Messenger RNA biogenesis [BR:
mcaz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
138042369
mRNA degradation factors
5'-3' decay
Decapping complex
138042369
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
GVIN1
Motif
Other DBs
NCBI-GeneID:
138042369
NCBI-ProteinID:
XP_068744332
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All DBs
Position
3:complement(15653663..15671141)
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AA seq
868 aa
AA seq
DB search
MRQSVHHVNMAGSLFGLNSEIPAFEDEELSELDPTLTNLDDGDSYDQLNDDTFGSGALED
DWELAHRKLSGLHEEGTHEVQYANWLKQKGFECKQGEEKSTTAKYLHSSTQEDFEDELNR
EEEILEQNLTKLVEDDEADSILVPRVSSKHKEIKHPSGINPTWDGTSPLSSPTSSTSIND
LISPSSKIWGSPSKLDKENKNKGPVNTQQSASPLDKLIKAEAERKQKLRRPFSPAFEDDS
IVTAIPPPGLVPPSRFMKKPPPVNAIKLEDLEKELTGDTSAPQQVPEGPKQTPRKTMIGQ
PPPGIPRPMMTPPGFQSPLTRMHTPPLPRQMFQPPRPSPSKHPISAMSGMHGMPGMLGPG
PGPGPGPHLLRTPRTPLFPRDPFSMLHSDPGHLLLRGGFLNFPMSPQYARFGSPQFHNKR
FQGPRHNFPRNQYDNRFSHEIRSPRQQQDRGEHQHQFTDLERKIHNILTLAESGPRKDDP
YAGLMTRREKEWLIKIQLLQLTSTEPDLDDYYFQTYTRRTAAKEHVKHSEGVQLRPNVQD
NREVRETTNMSLPQFEREKKKTYTPVDFHGSLGKVSSASVQHPRQMVDLNVVHITKGLEQ
DKQGSSAPLKDNKRRSQLLLTIEKGYDYLLTVESFDKKLIHIEEQERSEVLETRQLTVTK
LFTILKLSTEGCEKCDDEFFIQFLSIQKGKHLLSRALPMFSKVQIEAVLMAITRNILLLI
KKDSGEEFLNHVMVPLNRVSELMSPPAVIRCLQNMVFAQGNSTTQGSPLSVVLVNQFGLG
IFSTLLGRAAVISNSLSEAEDEMRNSWLNIVSQVSTEFQDIPLKQLARNLEAAKTLVALL
SSCTDVQTRALLQEHLRLAASAKTEIKT
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgcgccaatcagttcatcatgtcaacatggcgggttctctcttcggactcaattcagag
attccggcctttgaagatgaagaactttctgaattggatccaactctgacgaatctcgac
gatggagatagttatgaccaacttaacgacgacacgtttggctcaggagccttagaagat
gactgggagcttgctcataggaaactatcaggcttacacgaggaagggacacacgaggtg
cagtatgccaactggctcaagcagaaaggctttgagtgtaagcagggtgaagagaaatct
acaacagcaaaatatttgcatagttcaactcaggaagattttgaggatgaattgaatcgt
gaagaggaaatcctggaacagaatttaactaaacttgtggaagatgatgaagctgactca
attcttgttcctagggtatcatctaagcacaaggagattaagcacccatctggcataaac
ccaacatgggatggaacttcacctttgtccagcccaacatcgtcaacatcaataaatgat
ctgatctcaccttcctccaaaatatggggatccccttctaaacttgataaagagaacaaa
aacaaaggaccagtcaatacccaacagtcagcgtcaccattggataaattgataaaagcg
gaggctgaaaggaaacagaaacttaggagaccattttctccagcctttgaggatgattcc
attgttacagcaattcctccaccaggcctggtgcctccaagtcgattcatgaagaaaccc
ccacctgtaaatgctattaagctagaggacctggaaaaggagctcacaggggataccagt
gctcctcagcaagtaccagagggtccaaagcaaacacctcgcaagacaatgataggtcaa
ccacctcctggtattccgaggcccatgatgacccctcctggttttcagtctcctttgaca
agaatgcatactcccccattgccacgtcagatgtttcaaccaccaagacccagtccctct
aaacatccaatttctgcaatgtctggaatgcatggtatgcctggaatgctaggtccaggt
ccagggccagggccagggccacatttgttaagaacccccaggacacctctgtttccaagg
gatccattttccatgttgcattctgaccctggtcatttattactccgagggggtttcctt
aactttccgatgagcccacaatatgcaagatttggcagccctcagtttcataacaaaagg
ttccagggtcctcgtcacaactttccaagaaaccagtatgacaaccgattctcccatgaa
attcgttcacccagacagcagcaggacaggggggaacatcagcatcagtttaccgactta
gaaaggaagattcacaacatactgactttggctgaaagtggtccaagaaaagatgaccct
tatgcagggctgatgaccagaagagaaaaagaatggttgatcaagattcaattacttcaa
ctcactagcactgaaccagacctagatgattattactttcagacttacacacggagaaca
gcggccaaggagcatgttaaacacagtgagggtgtacagttaagacctaatgtacaagac
aatagagaagttagagagacaacaaacatgtccttaccgcagtttgaacgagagaagaag
aagacttacactccagtggactttcatgggtccttaggaaaggtttcttctgcgtcagtt
caacaccccaggcaaatggtggatttgaatgtagtgcatatcacaaaaggtcttgaacag
gataaacaaggcagttcagctcccttgaaggacaacaagaggcgcagccaactcttgctt
accatagagaagggttatgactatcttttgacagttgaaagttttgataaaaagttgatt
catattgaggaacaagaaaggagtgaagttcttgaaactaggcaacttactgttacaaag
ctgtttaccatattaaagctatccacagagggttgtgaaaagtgtgatgatgaattcttc
attcaatttctttccatccaaaaaggaaagcatcttctgagtagagcattgccaatgttc
agcaaggttcaaatagaagcagtattaatggccataacaagaaatattttactccttatt
aaaaaggacagcggtgaagagttcttgaatcatgtgatggttcctcttaatcgtgtgtca
gagcttatgtctccaccggcagtgatccgctgtcttcaaaacatggtgtttgcacaaggc
aattccactactcaaggatcaccgctttctgtggtcctggtaaatcagtttggcttggga
attttcagcacattattgggaagagcagctgtcatatcaaacagtttatctgaagcggaa
gatgagatgagaaattcttggttaaacatcgtctctcaggtatcaaccgagtttcaagat
atccctctcaagcaactggcaaggaatctagaagcagctaagacattagttgctttgttg
tcctcatgtaccgacgtccagaccagagctttactacaggagcacttgaggctagctgct
tctgcgaaaacagaaattaaaacgtag
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