Montipora capricornis (leaf plate montipora): 138047014
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Entry
138047014 CDS
T10557
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
mcaz Montipora capricornis (leaf plate montipora)
Pathway
mcaz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcaz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138047014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcaz03019
]
138047014
Enzymes [BR:
mcaz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
138047014
Messenger RNA biogenesis [BR:
mcaz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
138047014
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
Motif
Other DBs
NCBI-GeneID:
138047014
NCBI-ProteinID:
XP_068749778
LinkDB
All DBs
Position
4:complement(42784851..42806154)
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AA seq
542 aa
AA seq
DB search
MVEVVWNNFEDLFPEIKSVIEKSVFVAIDTEFTGLYTTDASQPSLFDDPETRYKKLKKTA
SQFLISQFGLTAFVQLEEDPNKYIAHAFNFFLYPHSFGPIDCRFLSQASSLEFLCQHNFD
FNKFIYSGVPYLNEDQATLLCKYHQNGDLYTSFQSQTLRIIDENIVDSCANLEEWLLSAQ
DGDEIELRPGSCQAQYLFLEELKRRFTGIKCRVLNQSKLTVTKLPTVNGCKPDVNSDHLS
QEQEKTLQAMVGFSRIFHVLTACKKPLVGHNVLTDLMLTYEKFYKPLPESFKDFKLEISK
LFPLIYDTKFIAFEMRKNPALSQCNFFDDTNLEKLHAALSSNDAQFFALFAPSIPLDEKC
FRYLEEKLSHEAGYDSFLSGFVFLRMAHILAFKSSKRRIEGPVPFSKFLRVLKQFENLVQ
LSRATVQHVNLSGPDPPSIRPQWLYVSSKLKSKPLVARTLAQEFAAFGSVDVKILDSQHA
LVAVAQHRKAKDVLQSFRRHKLLNVRPYNSFLDSSELKVACWCCGTALVLSGAAIFLWKS
LR
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atggttgaggttgtgtggaacaattttgaggatcttttccctgagatcaaaagcgtaatc
gagaagagtgtttttgtggctattgacacagaatttactggcctttatacaacagatgct
tctcaaccaagcctatttgatgatccagaaacacgctacaagaaactgaagaaaactgcc
tcccagttccttattagccagtttggattaacagctttcgttcagttggaagaagatccc
aacaaatacattgctcatgcattcaatttctttttatatcctcattcttttgggcccata
gattgcagatttcttagtcaggcctctagcctggagtttttgtgccagcataactttgat
tttaacaagttcatatacagtggagttccttatctgaacgaagaccaggctactctgctc
tgcaaatatcatcaaaatggtgatttgtacacaagtttccagtcccaaactttgaggata
atagatgagaatattgtagacagttgtgcgaatttagaagaatggcttttgtctgcacaa
gatggagatgaaattgagttacgtcctggcagttgtcaagctcaatatctttttctcgaa
gaactgaaaagaaggtttacaggaataaagtgtcgtgttttgaaccagtccaagttgact
gtaacaaaattacccacagttaatggatgtaaaccagatgttaacagtgatcatctctct
caagaacaagagaaaacattgcaagccatggttggtttttcaagaatttttcatgtttta
actgcttgcaaaaagccacttgtaggacacaatgttttaacagacttgatgctgacttac
gaaaagttttacaaacctttaccagaaagtttcaaagacttcaaattggaaatcagcaag
ctattcccattgatatatgacacaaagttcatcgcctttgaaatgcgaaaaaatccggct
ttatcacaatgcaatttctttgacgatacaaacttagaaaaacttcatgctgcattatca
agcaacgatgctcagttctttgcgctatttgcgccctcaattcccttggacgaaaagtgc
ttcagataccttgaagagaagctatctcacgaggcaggctatgactccttcctttccggt
tttgtgtttctaaggatggcgcacatactggccttcaaatcatcaaaaaggagaatagaa
gggcctgtccccttttcaaaattccttcgcgttctgaagcaattcgagaatctcgttcaa
ctaagcagagcaaccgtccagcacgtgaatctttctggccccgaccctccctccattcgt
ccgcaatggctttacgtctcgtccaagcttaaaagcaaacctcttgttgcgaggacgtta
gctcaagaattcgctgcctttggttctgtggacgtgaaaattttggactcgcagcatgcg
cttgtcgctgtcgctcaacacagaaaagccaaagatgttttgcaatcattcagacgccac
aagttgctgaatgttcggccttacaactcgtttttagattcttccgaacttaaagtagcg
tgttggtgttgtggaaccgctttggttctgtcaggtgccgcaatatttttgtggaaatca
ttgagatag
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