Montipora capricornis (leaf plate montipora): 138049873
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Entry
138049873 CDS
T10557
Name
(RefSeq) 5'-3' exoribonuclease 2-like
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
mcaz Montipora capricornis (leaf plate montipora)
Pathway
mcaz03008
Ribosome biogenesis in eukaryotes
mcaz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcaz00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
138049873
09123 Folding, sorting and degradation
03018 RNA degradation
138049873
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcaz03021
]
138049873
03019 Messenger RNA biogenesis [BR:
mcaz03019
]
138049873
03009 Ribosome biogenesis [BR:
mcaz03009
]
138049873
03016 Transfer RNA biogenesis [BR:
mcaz03016
]
138049873
Transcription machinery [BR:
mcaz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
138049873
Messenger RNA biogenesis [BR:
mcaz03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
138049873
Ribosome biogenesis [BR:
mcaz03009
]
Eukaryotic type
Pre-60S particles
RNases
138049873
Transfer RNA biogenesis [BR:
mcaz03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
138049873
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
138049873
NCBI-ProteinID:
XP_068752445
LinkDB
All DBs
Position
5:complement(20560208..20603303)
Genome browser
AA seq
999 aa
AA seq
DB search
MGVPAFFRWLSKKYPSIVVHCVEEKAREVNGVTAPVDTSLPNPNDYEFDNLYLDMNGIIH
PCCHPENKPAPQNEDEMMVAIFEYIDRIFSIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
ASKESREKAEEIAKIRSELKERGAALPPEKEKTEHFDSNCITPGTEFMANLSLCLRYYIA
DRLNNDPGWKNIKVVLSDANVPGEGEHKIMDYIRKQRANPNHDPNTKHCLNGADADLIML
GLATHELHFTILREEFKPNQKKPCEICGQIGHAMDECMGLPKEKQGEFDELPTPVAQDVE
FIFIRLNVLREYLERELRMEGLPFPYSFERCLDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVGIYKRVLPRCGGYLAKHGIVDLSRVQMVLQELGYVEDEIFKKRQQNDLAYRRRLKE
NKAREKLKRQRMDGPLWTPSGQFSPSVITNSPSPIVNPRQEAYAMRKQGMSYSADRTTPQ
NEANKSAAASLKALLTTCTPSPDPSMSSAASTPNSVSSTGKRKQNDDDDEEEPKDDIRLW
EAGWKGRYYQNKFQLSENDAGYDDFRKKVADAYVEGLCWVLLYYYQGCPSWKWFYPYHYA
PFASDFRDIDSLRNSFESGTQPFKPLEQLMGVFPAASGKFLPPTWRELMSNPESPIIDFY
PQDFAIDLNGKKYAWQGVALLPFVDEKRLLSALSKVYADLTKSEKTRNSRGKDRLFLRQG
NPVFDFLVGLYEGGAAEEPVDIVADLSGGMSGKVQPDDVPILPHKTVLSPLPNLYDLKDN
RSISVLFGDPVYEEGHIYKAEILPKAQFPARVLKPEGYDRKTPYRPVIGMNANRTSFAQI
GDAGRRMLNFQRGDIFRPQTPGNFVPPFRSFTSPPPNNPRHGYPTHPRSNPSTPLSSRDY
NDARRQTYDRRAPQHNYSGGYQGARSQYNSGGFQRNGPSAQSRSAQSFRGPGSSQSQFSR
NVYQNSSRDQWQQPNRQGPPERDSRRHSYPLSNYRYRPY
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccagccttctttcgttggctttcgaagaaatatccgtcgatagtcgtccac
tgtgttgaagaaaaggcccgtgaagttaatggtgtcacggcccctgtggatacaagtttg
ccaaaccccaatgattatgaatttgataacttgtatcttgatatgaatggtatcatccat
ccatgctgccacccggaaaacaagcctgctccacaaaatgaagatgagatgatggtggca
atctttgaatatattgacagaattttttctattgtgaggccaagaaagttactttacatg
gccattgatggagtggctccaagagcaaaaatgaatcaacaaagatcacgccgtttcaga
gcatcaaaggaatccagagaaaaagctgaagaaattgcaaagatacgtagtgaactaaaa
gaaagaggagcagcccttccccctgaaaaagaaaaaacagaacattttgacagtaactgc
attacacctggaactgagttcatggccaatttatccttatgtttgaggtactatatcgca
gacagactgaacaatgatcctggatggaagaatataaaggtcgtcctgtcagatgctaat
gtaccaggggaaggagagcataaaatcatggactacataagaaagcagagagcaaaccca
aatcatgaccccaatacaaagcattgtctaaatggagctgatgctgatctgattatgctt
ggtcttgctacacatgaacttcattttacaatactaagggaagagtttaaaccaaaccag
aaaaaaccatgtgagatctgtggacaaatagggcatgccatggatgaatgcatgggactt
cctaaagaaaaacagggagagtttgacgagttgcctacacctgtggcacaagatgtggaa
tttatttttatcaggttaaatgttttgcgagagtacctagagcgtgaacttaggatggaa
ggccttccttttccatatagctttgagcgctgtcttgatgactgggtattcatgtgcttc
tttgtaggaaatgatttcctgcctcatttgccatcactggaaatcagggaaggagccatt
gatagacttgttggaatttacaagagagttctaccaagatgtgggggctaccttgcaaaa
catggaattgtggatctgagcagagtgcagatggttcttcaagagcttggttatgttgaa
gatgagatctttaaaaagaggcagcaaaatgatcttgcttatagaagacgcctgaaagaa
aataaagcaagagaaaaactaaaaaggcagagaatggatggacctttgtggactcccagt
ggtcagttcagcccaagcgtcatcacaaactctccatcacctattgtgaacccacggcaa
gaggcttatgccatgaggaaacaaggcatgtcatacagtgccgataggacaacacctcag
aatgaggccaacaagagtgctgcagctagtttgaaagcacttcttactacatgtacacca
tcgccagatccaagtatgtcatctgcagcaagcacacccaactctgtatcatcaacgggc
aagagaaagcagaatgatgatgacgatgaagaggaacccaaggatgacataaggttgtgg
gaagcagggtggaagggacgttattaccaaaacaagtttcaactttctgagaatgatgca
ggatatgatgatttcaggaagaaagtggctgatgcttatgtggaaggactctgttgggtg
ttactctattattaccaaggttgcccatcatggaaatggttttatccttatcactacgca
ccatttgcatctgattttcgtgacattgattcccttcgcaactcatttgagagtggaaca
caaccgttcaaacccctggagcagctgatgggagttttcccggcggccagtggcaagttc
cttcctccgacatggagggagctcatgtcaaacccagagtctccaataatcgatttctat
cctcaagactttgcaattgacctcaatgggaaaaaatatgcctggcaaggtgtggcttta
ttgccctttgttgatgaaaaaaggctgctttctgctcttagcaaagtatacgcggattta
acaaaatcagaaaaaacaaggaacagtcggggtaaagatcgcttgtttctccgtcaagga
aatcccgtgtttgacttcctagtcggtttgtacgaaggtggcgccgcggaagagccagtg
gatattgttgctgacctcagtggaggaatgtcaggcaaggttcagccagatgatgttccg
atccttccacacaaaactgttctttctccccttcctaatctttacgatttgaaggataac
cgatcaataagtgtgttgtttggtgatcccgtttatgaggagggtcacatttataaagca
gaaattttacctaaagcacaatttccagctcgtgttcttaaaccagagggatatgaccga
aaaactccatacagacccgttattggcatgaatgccaacaggacgtcgtttgcgcaaatt
ggcgacgctggtcgacgtatgctgaattttcaaagaggagatatttttcgtccccaaacc
ccaggaaacttcgtgccgccctttcggtccttcacaagtcctcccccgaataatcctagg
catggttaccctactcatccacgatccaaccccagcactcctctttcgtcacgtgactat
aacgatgcaaggcggcaaacctacgatcgacgtgccccgcagcacaactactcgggaggc
taccaaggagctcgatcacaatacaactctggtggctttcaaaggaatgggcctagtgcc
cagtctcgttcggcccaatcctttcgggggcctggatcaagtcaatctcagttctctcgc
aatgtttaccaaaactcgtcacgtgatcaatggcagcagccaaatcgacaaggacctcca
gaaagagattctcgtcgccactcgtacccgctttccaattatcgctacagaccttactaa
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