Mycolicibacterium chubuense: Mycch_0902
Help
Entry
Mycch_0902 CDS
T02150
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mcb
Mycolicibacterium chubuense
Pathway
mcb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mcb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Mycch_0902
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcb03021
]
Mycch_0902
03400 DNA repair and recombination proteins [BR:
mcb03400
]
Mycch_0902
Enzymes [BR:
mcb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Mycch_0902
Transcription machinery [BR:
mcb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Mycch_0902
DNA repair and recombination proteins [BR:
mcb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Mycch_0902
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AFM15712
UniProt:
I4BEK5
LinkDB
All DBs
Position
916542..920495
Genome browser
AA seq
1317 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITGVDDEMRHNELSTLEAEMAVERKALEDQRDADLEARAQKLEAD
MKELEEEGAKSDVKRKVRDGGEREMRQLRDRAQRELDRLEEIWTTFTKLAPKQLIVDELL
YRELQDRYGEYFEGAMGAESIKKLIETFDIDAEAESLRDTIKNGKGQKKLRALKRLKVVA
AFQTNSNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEIEGDKGEYT
PAAKDQPETGVYSSPAEAIMALDRGALSVRAKIRVRLTQLRPPADIEAQLFPEGWTPGDA
WTAETTLGRVMFNELLPRGYPFINEQMHKKVQARIINDLAERYPMIVVAQTVDKLKDAGF
YWATRSGVTVSMADVLVPPEKQEILERYEAEADGIEKKYQRGALNHDERNEALVKIWQDA
TEEVGEALRAHYPKDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCETERGITVTL
AEKQDDGTMVRDQHIETSAYARTLATDAVDADGNVVVERGHDLGDPAIDALLAAGVTEVK
VRSVLTCTTGTGVCAKCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVT
GGADIVGGLPRVQELFEARVPRNRAPIADVTGRIRLEESDKFYKITIVPDDGGEEVVYDK
LSRRQRLKVFKHDDGSERLLTDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVKEVQ
EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERGEFETENRRVVAEGGE
PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLQGLKENVIIGKLIP
AGTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
gtgttagacgtcaacttcttcgatgagctccgcatcggcctggccaccgccgacgacatc
cgtcagtggtccttcggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
cccgagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgcgccaaggtgcgccgtgagcggatgggccacatcgagctggccgcgccc
gtcacgcacatctggtacttcaagggtgtgccgagccggctcggttacctgctggacctg
gcaccgaaggatctcgagaagatcatctacttcgcggcctacgtcatcaccggcgtggac
gacgagatgcggcacaacgagctgtccacgctggaggccgagatggccgtcgagcgcaag
gcgctcgaggatcagcgcgacgccgatctcgaggcgcgggcccagaagctcgaggccgac
atgaaggagctcgaggaggagggcgccaagtccgacgtcaagcgcaaggtgcgtgacggc
ggcgagcgcgagatgcgccagctccgcgaccgggcccagcgcgagctggaccggctcgaa
gagatctggacgacgttcaccaagctggctcccaagcagctgatcgtcgacgagctgctc
taccgcgagctgcaggaccgctacggcgagtacttcgaaggcgccatgggcgccgagtcg
atcaagaagctcatcgagaccttcgacatcgacgccgaggcggagtcgctgcgggacacc
atcaagaacggcaagggccagaagaagctgcgtgcgctcaagcggctcaaggtcgtcgcg
gcgttccagaccaacagcaactcgccgatgggcatggtcctcgacgcggtgccggtgatc
ccgccggagctgcgcccgatggtccagctcgacggcggccgcttcgcgacctcggatctc
aacgacctgtaccgccgcgtcatcaaccgcaacaaccggctcaagaggctgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcgcatgctccaggagtcggtggacgcg
ctgttcgacaacggccgccgcggccgtccggtcaccggaccgggcaaccgtccgctcaag
tcgctgtcggatctgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtggtcggcccgcagctcaagctgcaccag
tgcggtctgcccaagctgatggcgctcgaactgttcaagccgttcgtgatgaagcgtctg
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcgcatggtggagcggcagcgt
ccgcaggtgtgggacgtcctcgaagaggtcatcgccgagcacccggtgctgctcaaccgc
gcaccgacgctgcaccgcctcggcatccaggccttcgagccgcagctggtggagggcaag
gccatccagctgcacccgctggtctgtgaggcgttcaacgccgacttcgacggcgaccag
atggccgtgcacctgccgctgtccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctgtctcccgcgtcgggccgcccgctggccatgccgcgtctggac
atggtgaccggcctgtactacctgaccaccgagatcgagggcgacaagggcgagtacacg
ccggccgccaaggatcagccggaaacgggtgtgtacagctcgccggccgaggccatcatg
gcgctcgaccgcggcgcgctgagcgtgcgggccaagatccgggtccggttgacgcagctg
cgtccgccggccgacatcgaggcgcagctgttcccggagggctggaccccgggcgacgcc
tggaccgccgagacgacgctgggccgggtgatgttcaacgagctgctgcccaggggctat
ccgttcatcaacgagcagatgcacaagaaggtgcaggcccggatcatcaacgatctggcc
gagcgctacccgatgatcgtcgtcgcgcagaccgtcgacaagctcaaggacgccggcttc
tactgggccacccggtcgggtgtcaccgtgtcgatggccgacgtgctggtgccgccggag
aagcaggagatcctcgagcgctacgaggccgaggccgacggcatcgagaagaagtaccag
cgcggtgcgctcaaccacgacgagcgcaacgaggccctggtcaagatctggcaggacgcc
accgaagaggtcggcgaggcgctgcgggcgcactacccgaaggacaacccgatcatcacg
atcgtggattcgggcgccacgggtaacttcacgcagaccaggacactggccggcatgaag
ggtctggtgaccaacccgaagggtgagttcatcccgcgtccgatcaagtcctcgttccgc
gagggcctgaccgtgctggagtacttcatcaacacccacggtgcccgaaagggtctggcg
gacaccgcgctgcgtacggccgactcgggttacctgacccgtcgtctggtcgacgtgagc
caggacgtcatcgtgcgcgagaccgactgcgagaccgagcgcggcatcaccgtcacgctg
gccgagaagcaggacgacggcacgatggtgcgcgatcagcacatcgagacgtccgcctac
gcgcgcaccctggccactgacgcggtcgacgccgacggcaacgtcgtcgtcgagcggggt
cacgacctgggtgacccggcgatcgacgcactgctggccgcgggtgtcaccgaggtcaag
gtccgctcggtgctgacgtgcaccaccggcaccggcgtgtgcgccaagtgctacggccgc
tcgatggcgaccggcaagctggtcgacatcggcgaggccgtcggcatcgtggccgcgcag
tcgatcggtgagcccggcacgcagctcacgatgcgtaccttccaccagggtggtgtcacc
ggtggtgccgacatcgtcggtggtctgccccgcgtgcaggagctgttcgaggcccgcgtt
ccgcgcaaccgtgccccgatcgccgatgtcaccggacggatccggctggaggagagcgac
aagttctacaagatcaccatcgttcccgacgacgggggcgaggaggtcgtgtacgacaag
ctctcgcggcgtcagcgcctgaaggtgttcaagcacgacgacggctccgagcgtctgctg
accgacggcgaccacgtcgaggtgggccagcagctgatggaaggctcggccgacccgcac
gaggtgctgcgcgtccagggcccccgcgaggtgcagatccacctcgtcaaggaggtccag
gaggtctaccgcgcccagggtgtgtcgatccacgacaagcacatcgaggtcatcgtccgg
cagatgctgcgtcgcgtcacgatcatcgattcgggtgcgacggagttcctgcccggctcg
ctgaccgagcgcggcgagttcgagaccgagaaccgtcgggtcgtcgccgagggcggcgag
cccgcggcgggccgcccggtgctgatgggtatcacgaaggcgtcgctggccaccgattcg
tggctgtcggcggcgtcgttccaggagaccacccgcgtgctcaccgatgcggcgatcaac
tgccgcagcgacaagctgcagggtctgaaggagaacgtgatcatcggcaagctgatcccg
gccggtaccggcatcaaccggtaccgcaacatccaggttcagccgaccgaggaggcccgc
gccgcggcgtacacgatcccgtcctacgaggatcagtactacagcccggacttcggccag
gccaccggcgctgcggtgccgctggacgactacggctactcggactaccggtag
DBGET
integrated database retrieval system
