Mycolicibacterium chubuense: Mycch_1273
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Entry
Mycch_1273 CDS
T02150
Name
(GenBank) VCBS repeat-containing protein
KO
K20276
large repetitive protein
Organism
mcb
Mycolicibacterium chubuense
Pathway
mcb02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
mcb00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Mycch_1273
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Big_9
Cadherin_5
Cadherin_4
FctA
REJ
Motif
Other DBs
NCBI-ProteinID:
AFM16081
UniProt:
I4BFM4
LinkDB
All DBs
Position
1290904..1296057
Genome browser
AA seq
1717 aa
AA seq
DB search
MGVVMGHARYIGRVGALAVALGIGSAIASPGGIAWAEPDSGPSASADASAGGQASGGAGS
DTSESAGSNAQSGSGDSDTESAADDAAEPDDAVTDDDTVADGVDSAGDATDDSAADIEGA
EEQPDVEDTDVAQDDSGPAAVEESTDTAGDTAVEQAPTRTSARHRLSETTAPVAKHESIE
SSAPATVEAATDDQSTPSDPPAPLSRVAPLPRASVTASEAGDSAPLPSSTAVESGAMTTT
LLSALLLPGAPGVPAAPADTPLVWGLLAFARRQSGQQARQIGSAGTQVTSGELLDAAAED
NNPPTGRAVVGSPSWFSGKVTGRVIGSDPDRDRLTYSGSTDTGKGTVVVAANGRFTYTPT
AEARHAAAQTGASEHDLTDTFTVAVDDGNGGVTPVSVTVRISPFNQRPTSSASVDRPDMG
TGVVTGTIETADPDGDSVTYVASDPGKGFVEINDDGTFAYTPTEAAREAASARPGRAADR
TDRFTVTVDDGHGGFQTVAVTVAIAAIDNSAPEPVQVDTSTPNPFSGSVRGRLIATDPDG
DRLTFSGTTSTAKGTVTVAPSGRFIYTPTAAARHAAAADGASDEDKTDVFDITVVDAYGG
TAVVPVVVNVAPLNSAPTRARASAGAPDADTGAVAITVTARDADNDALSVSAPDTDKGGV
VDNGDGTFTYTPTVAARLAAGADGASNDDMLDTVTFTVDDGHGGTATASVTVAIVPLAAV
VNHDPTDGAYEAGEPDSDAKVTGQVTATDPDGDDLTYSGPDTSTKGGAVTVNADGTFDYT
PSDDARHAASALGASTADQQDTFTVTVSDGQGGTLAVPVTVAILPKNTAPDGSYTAGQPD
SNGKISGAVTSTDADGDTRTYSAPGTSAKGGTVHVNADGTFTYTPSAAARENAAKAGATT
ADKTDSFVVTVDDGHVGGATTVTVSVAILPAPNSAPTNGKATVGQPGTDGKVSGTVTATD
ANGDPLSYSGPVTSARGGTVLVNANGTFLYSPSDDARHAASALGATTADKQDTFTVTVSD
GRGGTLEVPVTVAVLPKNAAPTGSYAAGAPDSNGVVTGTVTSADADGDTRTYSGPATSAK
GGTVTLNPTTGAFTYTPTAAAREQATQSPGVDTDTFTVTVSDGHGGSTPVEVTVTIAPNV
VTSDSVSGVPFSGVIAAPGGTLYEITTDASSLAGSGSTYVSVLTADGRVLTTAEVPGQPA
HLVTEARPDGTLLVTTTDVQAQKTYFTAVGSAGQATTVKTVDGASYYFPATASNGTIFTL
ITLQDEQNAFHFSLVRIAPDNTVTTYALNTSATGPVGAYSPPVVGPDGAAYVLSADAATQ
QASIFVVRPDGSSFSTSPISVLQATPIVVGADGTAYAAALTINEAAQQYETTIVTIKGSD
VTTRSVVGLPASQLIAAPDGSVLLTVTDVTSEQYSLVRITPTGITSSATASGLVESWPQV
AADGTAYLTGSGDAAQVTVLRPDGSSLIVELPGDPIQGQVSQFGITGIGPDNKAYIPVSL
GDGFGVAVVGASGLETTYPIDGFPTQAPVFDANGHAIQTVDTGLGSTQLVVLSTGATSTA
LAGSAAQSQGIVPSVVVGPEGTAFLLTTYADGTVHGLAFNPDGTTVGTFTDHGTVALVLK
LGGLQGYSGSQFVFGPDGTAYVTVDDVDNTSSTAAYTKATVYAMNATGVTKVAEVADAYG
LAVTVAPDGTVYLSTTTGDLTGGFTTTVRAISTTDAL
NT seq
5154 nt
NT seq
+upstream
nt +downstream
nt
atgggggttgtcatgggtcatgcgcgctatatcggcagggtcggagcgcttgctgtagct
ctgggtatcggatcggcgatcgcatcgccagggggcatcgcctgggccgaacccgattcg
ggaccgtcggccagtgccgacgcatccgcgggcggacaagccagcgggggcgccgggagc
gacacctccgaaagcgccggcagcaacgcgcagtccgggtcaggtgacagcgacaccgaa
tcggcggcagacgacgccgcagaacccgacgacgcggtcaccgacgatgacacggtcgcc
gacggtgtcgactcggcaggcgacgcgaccgatgactccgcagccgacatcgagggcgcg
gaggagcagccagacgtcgaggacaccgatgtcgcacaagatgattcgggcccggcagca
gtcgaggaatccaccgataccgcgggggacaccgcagtcgaacaggccccgacgcgcacc
agcgcccgtcatcgcctcagcgagaccaccgcgcccgtggccaagcacgagtcgatcgag
tcctctgctccggcgacggtcgaggccgccaccgacgaccagtccacgccgagcgacccg
cccgcgccgctgtcgcgcgtcgcgcccctgccgcgcgcgagcgtgaccgcgtccgaggcc
ggcgactccgcaccgctcccgtcgtcgacggcggtggagtccggtgcaatgacgaccacg
ctgctctcggcgctgctgctgcccggcgctcccggagttcccgcagcgcccgcggacact
ccactggtatgggggctgctcgcattcgcgcgacgccagtccggtcagcaggcgcgccag
atcggcagtgcgggaacgcaagtcaccagcggtgagctgctcgacgccgcggccgaggac
aacaacccgccgaccggtcgcgcggtcgtcggctcaccgtcgtggttctccggcaaggtg
accggccgggtcatcggctccgatcccgaccgtgaccggctgacctactccgggtcgacc
gacaccggcaagggcactgtcgtggtcgccgcgaacggacggttcacctacacgcccacg
gcggaggcgcgtcacgcggccgcccagaccggcgcctccgagcacgacctgaccgacacg
ttcaccgtggcggtcgacgacggcaacggcggcgtcaccccggtgagtgtcaccgtgcgc
atcagcccgttcaaccagcgaccgacatcctcggcctcggtcgaccggccggacatgggc
accggcgtggtcaccggaacgatcgagaccgcggaccccgacggcgactcggtcacctat
gtggcgagcgacccgggcaagggcttcgtcgagatcaacgacgacggcaccttcgcctac
acccccaccgaggcggcgcgcgaggccgcgagcgcccggccgggccgggcggccgaccgc
accgaccggttcacggtcaccgtcgacgacgggcatggcgggttccaaaccgtcgcggtg
accgtcgccatcgccgcgatcgacaacagcgcgccggaacccgtgcaggtcgacaccagt
actccgaatcccttcagcggttcagtgcggggacgcctgatcgccaccgatcccgacggc
gaccggttgaccttcagcgggaccaccagcaccgccaaaggcacggtcaccgtcgctccc
tcgggacgcttcatctacacacccaccgcggccgcgcgccacgccgccgcggccgacggc
gcctccgacgaggacaagaccgacgtcttcgacatcaccgtggtcgacgcgtacggcggg
acggccgtggtgcccgtcgtcgtgaacgtcgcgcccctcaacagcgctcccacgcgggcc
cgggcgagcgccggggcgccggatgccgacaccggtgcggtcgccatcaccgtcaccgcg
cgggacgcggacaacgacgccttgtccgtcagtgcgcccgacaccgacaagggcggagtc
gtcgacaacggcgacggcacgttcacctacaccccgaccgtcgccgcgcgcctggccgcc
ggcgccgatggggcgtcgaacgacgacatgctcgacacggtgacgttcaccgtcgacgac
ggtcacggcggaaccgccacggccagtgtcacggtggcgatcgtgccgctggccgccgta
gtcaaccacgaccccaccgacggtgcttacgaagcgggagaaccggattcggacgccaag
gtcaccggacaggtgaccgccaccgatcccgacggcgacgacctgacctacagcgggccg
gatacctccaccaagggcggcgcggtcaccgtcaacgccgacggcaccttcgactacacc
ccgagcgacgatgcgcggcatgccgcctcggcgctgggcgcctcgacggccgaccagcag
gacaccttcacggtgacggtgtccgacggacagggcggcacgctggcggtaccggtgacc
gtggcgatcctgccgaagaacaccgcgccggacggctcttatactgcgggacaaccggat
tcgaacggcaaaatcagcggtgcggtcacctccaccgacgccgacggcgatacccgcacc
tacagcgcgccgggcacctctgccaagggcggcaccgttcacgtcaatgccgacggcacg
ttcacctacaccccgagcgccgcggcgcgtgagaacgcggccaaggcgggtgccaccacc
gcggacaagacagacagcttcgtggtgaccgtcgacgacgggcatgtcggaggcgccacc
acagtgacggtgtcggtggcgatcctccccgcgcccaacagtgcacccacgaatgggaaa
gccactgtgggacagcccggtacggacggcaaagtcagcggcacggtgaccgccaccgac
gccaacggcgacccgctgagctacagcggaccggtcacctccgccaggggcggcacggtg
ctcgtcaacgccaacggcacgttcctctacagcccgagcgatgacgcgcggcatgccgcc
tcggcgctgggtgcaacgacggcggacaagcaggacaccttcacggtgaccgtctcggac
ggccgcggcggcacactggaggtcccggtgacggtcgcggtcctgccgaagaacgcggcg
ccgaccggttcttatgctgcgggagcgccggattcgaatggcgtggtgaccggcaccgtg
acctccgctgacgccgacggcgacacccgaacctacagcgggccggccacgtcagccaag
ggtggcacggtcacgctcaacccgaccacgggcgcgttcacgtacacgccgaccgcggcg
gcgcgtgagcaggcgacgcagtcaccgggcgtcgacaccgacacgttcacggtcacggtc
agcgacggccacggcgggtccacgccggtggaagtcacggtgacgatcgcgccgaacgtg
gtgaccagcgactcggtctccggggtgcccttcagcggcgtcatcgcggcgccgggcggc
acgttgtacgagatcaccacagacgccagcagcctcgccggctccggttcaacctacgtg
agcgtgctgaccgcggacggccgggtgctgacgaccgcagaagtcccagggcagccggca
catttggtcaccgaagcccggcccgatggaaccctgttggtgaccacgaccgatgtgcag
gcgcagaaaacgtacttcacggcggtggggtcagcggggcaggcgacgacggtgaaaacc
gtcgacggcgcttcgtattactttccagcaacagcgagcaacgggaccatcttcacgctg
atcacgttgcaggacgagcagaacgctttccacttctccttggtccgtatcgcgcccgac
aacacggtcaccacctacgcgctcaacacttcggcgaccggtccagtcggtgcctattct
ccaccggtggtgggtcccgacggagcggcctatgtcctttcggccgatgcagcaacgcag
caggcgtcgatcttcgtcgtcaggcccgatggaagttcgttcagtacgtcgccgatctcg
gtgctgcaggccacgccgatcgtcgtcggcgccgacgggacggcgtacgcggcggctctg
accatcaacgaggcggcgcagcagtacgagacgactatcgtgacgatcaagggcagcgac
gtgacgacacgcagcgtggtggggctgccggcatcgcagttgattgctgcgcctgacgga
tcggttctgctgacggtcaccgatgtcacctccgagcaatactccctggtccgcatcacc
ccgacgggcatcacgtcgtccgcgactgctagcggtttagtggagtcctggccgcaggtg
gccgctgacgggactgcctacctgaccgggagcggcgacgcagcccaggtgacggtgctg
cgcccggatggaagcagtctgatagtggagctcccgggtgaccccatccagggccaggta
tctcagttcggcatcaccggcatcggaccggataacaaggcgtacatcccggtaagcctc
ggagacggcttcggggtcgcggtggtcggcgcttccggcttggaaactacctacccgatc
gacggattccccactcaggcaccggtattcgatgccaacggccacgccatccagactgtg
gacacgggactgggttcgacccagctcgtggtcttgtccaccggagcgaccagcaccgcc
ctcgcgggcagcgcggctcagtcgcaaggaatcgttccttctgtcgtcgtcgggcccgag
ggaacggcattcctgctcaccacctacgcggacggcacggtgcacggcctggcgttcaac
cccgacggcaccaccgtgggcactttcacagaccacggaacggttgcgcttgttctgaaa
ctcggtgggctgcaggggtattccggctctcaattcgtgttcggacccgacggcacggcc
tatgtgaccgtcgacgatgtcgataacactagttcgacggctgcatataccaaggcgacg
gtctacgcgatgaacgcgacgggagtgacgaaggtcgccgaagtggcggacgcctacggg
ttggcggtcaccgtcgctccggacggcacggtctatctgagtacgaccacgggagatttg
accggcggattcaccaccaccgtgagggcgatcagcacgacggacgcgctgtag
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