Mycolicibacterium chubuense: Mycch_3872
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Entry
Mycch_3872 CDS
T02150
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mcb
Mycolicibacterium chubuense
Pathway
mcb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mycch_3872
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcb03019
]
Mycch_3872
03009 Ribosome biogenesis [BR:
mcb03009
]
Mycch_3872
Enzymes [BR:
mcb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Mycch_3872
Messenger RNA biogenesis [BR:
mcb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Mycch_3872
Ribosome biogenesis [BR:
mcb03009
]
Prokaryotic type
rRNA helicases
Mycch_3872
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
UvrA_inter
Flavi_DEAD
adh_short
Motif
Other DBs
NCBI-ProteinID:
AFM18597
UniProt:
I4BMU0
LinkDB
All DBs
Position
complement(4087995..4089686)
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AA seq
563 aa
AA seq
DB search
MTSSDPAPEHGDLSFADLQIHPSVLQAVRDVGYESPSPIQAATIPAMLAGSDVVGLAQTG
TGKTAAFAIPILSKIDTSSRTTQALVLAPTRELALQVAEAFSRYGAHLQVNVLPVYGGSS
YGPQLAGLKRGAQVVVGTPGRVIDHLEKGTLDVSHLDYMVLDEADEMLQMGFAEDVERIL
ADTPEYKQVALFSATMPPGIRKITAKYLHDPVEVTVKSKSQTAENITQRYIQVSHQRKMD
ALTRLLEVEQGDAMIVFVRTKQATEEVAEKLKARGFAAAAINGDIPQAVRERTINQLKDG
SIDILVATDVAARGLDVERISHVVNYDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRER
HLLNSIERVTRQKLVESELPSVEDVNERRVQKFRDSITEALAAPGIDLFRKLIEGYERDH
DVPMADIAAALALQSRDGEEFLMTEPPPEKRRERRERTDDREDRGPRKPRERRSDLATYR
IAVGKRHKVAPGAIVGAIANEGGLHRSDFGHISIKMDHSLVELPAKLSPKTLKALENTRI
QGQLIHLEPDRGPKPHRGKTKSK
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcctcggacccggcaccggagcatggtgacctgagtttcgctgacctgcagatt
cacccgtcggtgctgcaggcggttcgcgacgtcggatacgagtcgccctcgccgatccag
gcggcgaccattccggcgatgttggccggctccgacgtcgtcggcctggcccagaccggc
accgggaagacggcggccttcgcgatcccgatcctgagcaagatcgacacctccagccgc
accacgcaggcgctggtgctggcacccactcgcgagctggctctgcaggtggccgaggcg
ttcagccggtacggcgcgcacctgcaggtcaacgtgctgccggtgtacggcggcagctcc
tacggcccgcagctggccggcctcaagcgcggcgcgcaggtcgtcgtgggcaccccgggc
cgggtgatcgaccacctcgagaagggcaccctcgacgtctcgcacctggactacatggtc
ctcgacgaggccgacgagatgctgcagatggggttcgccgaggacgtcgaacgcatcctc
gccgacacccccgagtacaaacaggtcgcgctgttctccgcgaccatgccgcccggcatc
cgcaagatcaccgcgaagtacctgcacgacccggtggaagtcacggtcaagtcgaagtcg
cagaccgccgagaacatcacgcagcgctacatccaggtgtcgcaccagcgcaagatggac
gcgctgacgcgactgctggaggtcgagcagggcgacgcgatgatcgtgttcgtccgcacc
aaacaggccaccgaggaggtcgccgagaagctcaaggcgcggggattcgccgcggccgcg
atcaacggcgacatcccgcaggcggtgcgcgagcggacgatcaatcagctcaaggacgga
tccatcgacatcctggtggccaccgatgtggcggcccgcggcctggacgtcgagcgcatc
tcgcacgtggtgaactacgacatcccgcacgacccggagtcctacgtgcaccggatcggg
cgcaccggacgggccggacggtcgggcacggcgctgttgttcgtcacgccgcgggaacgg
catctgctgaactccatcgagcgggtgacccggcagaagctggtcgagtcggagctgccg
tcggtcgaggacgtcaacgagcgccgggtgcagaagttccgcgattcgatcaccgaggcg
ctggccgcaccgggcatcgacctgttccggaagctgatcgagggctacgagcgcgaccac
gacgtgccgatggccgacatcgccgccgcgctggccctgcagagccgcgacggcgaagag
ttcctgatgaccgagccgccgccggagaagcgccgcgagcggcgggagcggaccgacgac
cgcgaggaccgcggaccgcgcaagcctcgcgaacggcgcagcgacctcgcgacctaccgg
atcgcggtcggcaagcggcacaaggtcgctcccggtgcgatcgtcggcgccatcgccaac
gaaggcggcctgcaccgcagcgacttcggccacatctcgatcaagatggatcactcgctg
gtggagctgccggccaagctgtccccgaagacgctcaaggccctcgagaacacccgaatc
cagggtcagctgatccacctggaacccgaccgcgggccgaaaccgcatcgggggaagacc
aagtcgaagtga
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