Mycoplasma crocodyli: MCRO_0331
Help
Entry
MCRO_0331 CDS
T01205
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mcd
Mycoplasma crocodyli
Pathway
mcd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mcd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MCRO_0331 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcd03021
]
MCRO_0331 (rpoB)
03400 DNA repair and recombination proteins [BR:
mcd03400
]
MCRO_0331 (rpoB)
Enzymes [BR:
mcd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MCRO_0331 (rpoB)
Transcription machinery [BR:
mcd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MCRO_0331 (rpoB)
DNA repair and recombination proteins [BR:
mcd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MCRO_0331 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
BSH_YknX
DUF5887
Motif
Other DBs
NCBI-ProteinID:
ADE19793
UniProt:
D5E5D1
LinkDB
All DBs
Position
368768..372382
Genome browser
AA seq
1204 aa
AA seq
DB search
MAELNYRISKFGPKTSRRDYSVTKYSLPVFDILATNKESFDKFLKEGIEEALMEHYPIEA
SNKQVKLDYIKKSLRIEYPYKKGPSEGEEIRKCKAKGMNFSARIYAELQREITETGEIKR
DEVLLGEIPMITSGGSFIINGSEKVIVSQLIRSPGAYFGRGVRNKQSDDLFNKVEVLPRI
GSWLEISHKITTSNIDVVKIKIDKNKNVNLATFLGALGLNTKMMYKYFGNSKELEETITK
DKFVNQENLSDAEITDLCQEELFRWLRKGDRISDEAKKTLLPSILFDKKRYNLSITGRYM
LNNKLSLVDRITNTYLAEDIKNKNNEVVFHNGTFIDYKLALDIQKSFDEGEVATVYIDTL
RGENVYYKLVDQNKALAKRCKIAIVKVYPNRKWMEDADKKPVIVIGNDPKSVEQHLLISD
IVAVVGYYFNLIDGVGQDDDPDSMVNKRIVSVGELLQNQLNVALAKLEKTTRERMGAKET
EKVTSKNVTNNKLLTNQMKTFFNSSKLSQFMDQINPLAEVSNKRRVTSLGPGGLNRDTAQ
FEVRDVHSTHYGRICPIETPEGPNIGLILNYATYAKVNEHGFLQTPYFKVNNGVIDYEDL
RYLTASEETGLAFAQSSVRVDDTNKIIEKTLTIRKDYNYIIGKPSEIDFIEVSSKQMVSV
AAAAIPFLENDDANRALMGANMQRQSVPLIEAEAPLVATGIEKDIALYSAYNFRAKNDGV
VSYVDSFKIYVKTHDKGTQDKYYLKNFERSNQGTVICQKSIVKVGDEVKKGDLLVDGSSF
KDGELALGKNVLVAFTTYNGYNYEDAVILNERLVKDDVYTSIHIEEQTVLFRSSKAGDDK
LTADIPNTSKFSTRNLDEYGIVRVGSEVIAGDVLVGRVSPKGEENPSQEEKLLMAILQQR
PLNDKDTSLRVKNGHNGTVIGIEVLSRETGDILEDGIDKIVKVSIAQKRKIKVGDKMAGR
HGNKGVISVVLPEEDMPYLEDGTPVDIMLNPQGVPSRMNIGQVLELHLGMAARKLNTKFV
TPSFDGVKKSDIEDVLEEAGLDKSGKAYLIDPITGKKLDKPVSVGVMYMLKLSHMVDDKM
HARSVGPYSLITQQPLGGKSQNGGQRFGEMETWAIESYGATNVLQEILTYKSDDIQGRNI
LYASLATGKELPKPGIPESFNVLSYELRGLGIKLETKEAEILEDGDDTDIVQHWESEGVV
NEEY
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atggcagaattaaattacagaattagtaaatttggtcctaaaacatcaagacgtgattac
tcagtaactaagtattcacttccagtttttgatattctagcaaccaacaaagaaagtttt
gataaattcttaaaagaaggtattgaagaagctttaatggaacactatccaattgaagcg
tctaacaaacaagttaagttagattacatcaaaaaatctttaagaattgaatacccttac
aaaaaaggaccatcagaaggtgaagaaattagaaagtgtaaagctaaaggaatgaacttt
agtgcaagaatctatgctgaactacaaagagaaatcactgaaacaggagaaatcaaaaga
gatgaagttctcttaggagaaattccaatgatcactagtggtggaagtttcattatcaat
ggttcggaaaaagttatagtaagtcagttgattagatcacctggtgcttattttggtcgt
ggagttagaaataaacaatctgatgacttgtttaacaaggttgaagttttaccaagaata
ggttcatgacttgaaatttcacataaaattacaacttcaaatattgatgttgtaaaaata
aaaatcgacaaaaataaaaatgttaatttagcaacgtttttaggtgcgttaggtttgaat
acaaaaatgatgtacaaatattttggtaatagtaaagaacttgaagaaactattacaaaa
gataaatttgtaaatcaagagaatctaagtgatgcggaaataactgatttatgtcaagaa
gaattgtttagatgacttagaaaaggtgatcgtatttctgatgaagccaaaaaaactctt
ttaccaagtattttatttgataaaaaaagatataacttgtcaataacaggtcgttatatg
ttaaataataaactttcattagttgatagaattacaaatacatatttagctgaagatata
aaaaataaaaacaatgaagttgttttccataatgggacatttattgattataaactagca
cttgatattcaaaaatcatttgacgaaggtgaagttgctactgtttatattgacacttta
agaggtgaaaatgtttattacaaacttgttgatcaaaataaagcattagcaaagagatgc
aaaattgcaattgtaaaagtttatccaaatcgtaaatgaatggaagatgctgataaaaaa
cctgttatcgttattggtaatgaccccaaatctgtcgaacaacaccttttaatttctgat
attgttgctgttgttggttactattttaacttaattgatggtgtaggtcaagatgatgat
cctgattcaatggttaataaacgtattgtttctgttggtgaattattgcaaaaccaactt
aatgttgcattagcaaaattggaaaaaacaaccagagaaagaatgggagctaaagaaaca
gaaaaagttacttcaaaaaatgttactaacaataaattattaactaatcaaatgaaaact
ttctttaactcttcaaaactttcacaatttatggatcaaattaacccacttgcagaagtt
tctaataaaagacgtgttacttcgctagggccaggaggtcttaacagagatactgctcaa
tttgaagttcgggatgttcattcaactcactatggaagaatttgtccaattgaaactcct
gaaggacctaacatcgggcttattcttaactatgctacttatgcaaaagttaatgaacac
gggttcttacaaactccttattttaaagttaataatggtgtaattgattatgaagattta
agatacctaaccgcatctgaagaaacaggattagcttttgctcaatcttcagtaagggtt
gatgatacaaacaaaataattgaaaaaactttaacaataagaaaagattacaattatatt
attggtaaaccaagtgaaatagattttatcgaagtctcatcaaaacaaatggtttctgtt
gctgcagcagctattccttttcttgaaaacgatgatgctaaccgtgcacttatgggtgct
aacatgcaacgtcaatcagttccgcttatcgaagctgaagctccattagtcgcaactggt
atcgaaaaagacatagctctatattctgcttataacttccgagcaaaaaacgatggagtt
gttagttatgttgattcttttaaaatctatgttaaaacacatgataaaggaactcaagat
aaatattatttaaaaaactttgaacgtagtaaccaaggaacagtaatttgtcaaaaatca
attgttaaagttggtgatgaagttaaaaaaggtgatttattggttgatggttcatcgttt
aaagatggtgaattagcacttggtaaaaacgttttagttgcttttactacatataatgga
tataactatgaagatgccgttattcttaatgagcgtcttgttaaagatgatgtatataca
tcaatacatatcgaagaacaaacggttttatttagatcgagtaaagctggtgatgataaa
ctaactgctgacattccaaatacatcaaaattctcaacaagaaacttagatgagtatgga
attgtaagagttggtagcgaagttattgccggagatgttttggttggaagagtttcgcca
aaaggtgaagaaaacccttcacaggaagaaaaacttttaatggcaattttacaacaaaga
cctctaaacgacaaagatacttctttaagagttaaaaatggtcacaatggaacagttata
ggaattgaagttttatcaagagaaacaggagacatcctcgaagacggaattgataaaata
gttaaagtttctattgcccaaaaacgtaaaattaaagttggtgataaaatggctggtcgt
catggaaacaaaggggttatatctgttgttttacctgaagaagacatgccatatcttgaa
gacggaacaccggttgatattatgcttaatcctcaaggggttccttctcgtatgaatata
ggtcaagttttagaacttcacttaggaatggctgcaagaaaattaaacacaaaatttgtt
acaccatcttttgatggagttaagaaaagtgatatagaagatgttcttgaagaagcggga
cttgataaaagcggtaaagcttatttaatcgatcctattacaggtaaaaaattagataaa
ccagtttcagttggagttatgtatatgctaaaacttagccatatggttgatgacaaaatg
catgcacgtagtgttggcccatattcgcttatcacacaacaaccattaggaggaaaatct
caaaatgggggacaaagattcggagaaatggaaacgtgagctattgaatcttatggagca
acaaatgtgttacaagaaatcttgacatacaaatcagatgatattcaaggtcgtaacata
ttatatgcatcattagcaacaggtaaggaattacctaaacctggaattcctgaatcattt
aacgttttaagttatgaattaagaggtttaggaattaagcttgaaacaaaagaagctgaa
attcttgaagatggtgatgatactgatatagttcaacactgagaaagtgaaggagtagtt
aatgaagaatactaa
DBGET
integrated database retrieval system
