Microbulbifer celer: LPW13_01025
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Entry
LPW13_01025 CDS
T07789
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
mcel
Microbulbifer celer
Brite
KEGG Orthology (KO) [BR:
mcel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mcel03009
]
LPW13_01025 (rlmD)
Enzymes [BR:
mcel01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
LPW13_01025 (rlmD)
Ribosome biogenesis [BR:
mcel03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LPW13_01025 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
MTS
RrnaAD
Methyltr_RsmB-F
Cons_hypoth95
PCMT
Methyltransf_11
TRM5-TYW2_MTfase
Methyltransf_23
Methyltrans_SAM
Methyltransf_15
Motif
Other DBs
NCBI-ProteinID:
UFN57660
LinkDB
All DBs
Position
complement(276410..277807)
Genome browser
AA seq
465 aa
AA seq
DB search
MIRKPGRRPGPPRRPGLARSQSTQRTTQSPVVQIDKLSHEVRGIARYPVDGKNKTLFVDN
ALPGEEVKVKITASRARFDEGIASEIIQPSADRRTPPCPHFEHCGGCAIQYMDPAAQIAA
KQQILLDQLQRFAHATPEQVLPPLTGDNFGYRRRARLGVRFVKQAGSRKPQLVLGFREKR
SNNLVDITECGVLPADFSAQIPALHQLVDSCTGRKQISHIEVAIGDDATALVVRHLQPLS
EEDRQRLLDYVKTRDYHLYLQDDSGASTVWPEQGAERLAYGLADFGLTLQFHPQDFIQVN
FDINRQMVSRAIELLDPQADERVLDLFCGLGNFTLPLATRAAEVVGVEGAKVLTERGREN
AAHNNLDNIHFQAADLTADFTRSPWARGGFDKILLDPPRTGALEVVRNIATFGARRIVYV
SCNPATLARDTAELIQRGYRLSKAGVMDMFPHTTHVESIALFEKT
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgatcagaaagcccggccgtcggcccggaccaccacgcaggccgggattggctcgcagc
cagtccacacagcgaaccacccagtctccggtggtgcagatcgacaagctcagccacgaa
gtgcgcggcatcgcgcgctatccggtggacggcaaaaacaaaaccctgtttgtggataac
gcgctgcccggcgaagaggtgaaagtaaagatcaccgcgagccgcgccaggttcgacgag
ggcattgccagcgagattatccagccctccgcggaccgccgcacaccgccctgcccccac
ttcgaacactgcggcggctgcgccatccagtatatggacccggcggcacagatcgccgcc
aagcaacagatcctgctcgatcaactgcagcgctttgcccatgccacaccggagcaggta
ctcccgccgctgacgggagacaacttcggctaccgtcgccgcgcccgtctcggtgtgcgt
tttgtgaaacaggccggcagccgcaaaccgcaactggtgttggggtttcgggaaaagcgc
tccaacaacctggtggatatcactgaatgcggggtattacccgcggacttttccgcgcaa
atccccgcgttgcatcagctggtcgacagctgcaccgggcgcaaacagatctcccatatc
gaagtcgccattggcgacgacgccaccgcactggtggtccgccatctgcagccgctgagc
gaggaagaccgacagcgcctgctcgactatgtaaaaacgcgcgactaccacctgtacctg
caggacgacagcggtgccagcacagtctggcccgaacagggtgcagagcgcctcgcctac
gggctggcggatttcggtctgaccctacagtttcatcctcaggactttatccaggtcaac
ttcgacatcaaccggcagatggtcagccgcgcaatcgagctgctggacccacaggcggat
gaacgcgtactggatctgttctgcggcctcggcaatttcaccctgccactggccacccgc
gccgcagaggtggtgggagtagaaggcgcaaaagtgctgaccgaacgcgggcgggagaac
gccgcgcacaacaacctggacaatatccacttccaggccgccgacctcactgccgacttc
acccgcagcccctgggcacggggtgggttcgataaaatcctgctcgacccgccgcgcacc
ggcgcactggaagtggtgcgcaatatcgccaccttcggcgcccgtcgcatcgtctacgtc
tcctgcaaccccgccaccctggcgcgggacaccgcggaactaatccagcgcggctaccgt
ctaagcaaagcaggcgtgatggatatgttcccccacaccacccatgtggagtccatcgcc
ctgtttgagaagacttga
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